Gm13657 Gene Detail

Summary

• Symbol
  Gm13657
• Name
  predicted gene 13657

• Feature Type
  lncRNA gene
• IDs
  MGI:3650031
  NCBI Gene: 102638051
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:75607210-75621631 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 44.77 cM

Strain
Comparison

• SNPs within 2kb
  489 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650031	lncRNA gene	Chr2:75601250-75621631 (+)
129S1/SvImJ	ENSMUSG00200004960	lncRNA gene	Chr2:72652746-72657895 (+)
A/J	ENSMUSG00195020495	lncRNA gene	Chr2:72799577-72804729 (+)
AKR/J	ENSMUSG00220002480	lncRNA gene	Chr2:72765328-72770483 (+)
BALB/cJ	ENSMUSG00180007430	lncRNA gene	Chr2:72753253-72758405 (+)
C3H/HeJ	ENSMUSG00175011266	lncRNA gene	Chr2:72876519-72881668 (+)
C57BL/6NJ	ENSMUSG00215029330	lncRNA gene	Chr2:72719743-72724899 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013564	unclassified non-coding RNA gene	Chr2:70584548-70589868 (+)
CAST/EiJ	ENSTCUG00005032259	lncRNA gene	Chr2:72193270-72198869 (+)
CBA/J	ENSMUSG00210002622	lncRNA gene	Chr2:72917572-72922721 (+)
DBA/2J	ENSMUSG00185011471	lncRNA gene	Chr2:72753406-72758555 (+)
FVB/NJ	ENSMUSG00205018665	lncRNA gene	Chr2:72210655-72215810 (+)
JF1/MsJ	ENSUMUG00000043535	lncRNA gene	Chr2:72451982-72457463 (+)
LP/J	ENSMUSG00230027004	lncRNA gene	Chr2:74557825-74562974 (+)
NOD/ShiLtJ	ENSMUSG00190010972	lncRNA gene	Chr2:72824915-72830059 (+)
NZO/HlLtJ	ENSMUSG00225003743	lncRNA gene	Chr2:82322594-82327743 (+)
PWK/PhJ	ENSLUMG00010032751	lncRNA gene	Chr2:72680205-72685669 (+)
SPRET/EiJ	ENSMSPG00010021719	lncRNA gene	Chr2:74068607-74073749 (+)
WSB/EiJ	ENSIUOG00005011551	lncRNA gene	Chr2:72877689-72882876 (+)

Homology

• Gene Tree
  Gm13657
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm13657
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  53
• RefSeq
  6

• Ensembl
  ENSMUSG00000086813 (Evidence)
• NCBI Gene
  102638051

Representative Sequences			Length	Strain/Species
genomic	102638051	NCBI Gene Model | MGI Sequence Detail	14422	C57BL/6J
transcript	AK035219	GenBank | ENA | DDBJ | MGI Sequence Detail	1940	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Gm13657:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18468	Chr2:75607519-75607537 (+)	318 bp