Gm12829 Gene Detail

Summary

• Symbol
  Gm12829
• Name
  predicted gene 12829
• Synonyms
  Hrtlincr4

• Feature Type
  lncRNA gene
• IDs
  MGI:3650003
  NCBI Gene: 102636500
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:114537537-114540601 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 52.24 cM

Strain
Comparison

• SNPs within 2kb
  172 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650003	lncRNA gene	Chr4:114537537-114546065 (+)
129S1/SvImJ	ENSMUSG00200050616	lncRNA gene	Chr4:108420342-108427229 (+)
A/J	ENSMUSG00195047463	lncRNA gene	Chr4:109754450-109761338 (+)
AKR/J	ENSMUSG00220012680	lncRNA gene	Chr4:109023563-109030458 (+)
BALB/cJ	ENSMUSG00180048378	lncRNA gene	Chr4:107758461-107765348 (+)
C3H/HeJ	ENSMUSG00175042821	lncRNA gene	Chr4:108773005-108779891 (+)
C57BL/6NJ	ENSMUSG00215034712	lncRNA gene	Chr4:109908173-109915066 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005904	lincRNA gene	Chr4:105132168-105138898 (+)
CAST/EiJ	ENSTCUG00005022787	lncRNA gene	Chr4:108553333-108560225 (+)
CBA/J	ENSMUSG00210053335	lncRNA gene	Chr4:108386566-108393453 (+)
DBA/2J	ENSMUSG00185050922	lncRNA gene	Chr4:109917891-109924780 (+)
FVB/NJ	ENSMUSG00205045188	lncRNA gene	Chr4:107960068-107966961 (+)
JF1/MsJ	ENSUMUG00000047882	lncRNA gene	Chr4:109860188-109867069 (+)
LP/J	ENSMUSG00230046100	lncRNA gene	Chr4:113237760-113244647 (+)
NOD/ShiLtJ	ENSMUSG00190048484	lncRNA gene	Chr4:107755973-107762859 (+)
NZO/HlLtJ	ENSMUSG00225011594	lncRNA gene	Chr4:118725125-118732014 (+)
PWK/PhJ	ENSLUMG00010047809	lncRNA gene	Chr4:107254463-107261351 (+)
SPRET/EiJ	ENSMSPG00010031008	lncRNA gene	Chr4:109399429-109413971 (+)
WSB/EiJ	ENSIUOG00005045472	lncRNA gene	Chr4:108076323-108083208 (+)

Homology

• Gene Tree
  Gm12829
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Endonuclease-mediated
  1
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12829
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  602
• Tissues
  4
• cDNA Data
  2
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2

• Ensembl
  ENSMUSG00000085870 (Evidence)
• NCBI Gene
  102636500

Representative Sequences			Length	Strain/Species
genomic	102636500	NCBI Gene Model | MGI Sequence Detail	3065	C57BL/6J
transcript	AK050995	GenBank | ENA | DDBJ | MGI Sequence Detail	2433	C57BL/6J

Molecular
Reagents

• All nucleic 4

  cDNA 2

  Primer pair 2

References

• Summaries
  All 14

  Developmental Gene Expression 1

  Phenotypes 7
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:284183 George MR, et al., Minimal in vivo requirements for developmentally regulated cardiac long intergenic non-coding RNAs. Development. 2019 Dec 9;146(23):dev185314

TSS for Gm12829:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38419	Chr4:114537966-114537979 (+)	436 bp