Gm13058 Pseudogene Detail

Summary

• Symbol
  Gm13058
• Name
  predicted gene 13058

• Feature Type
  pseudogene
• IDs
  MGI:3650002
  NCBI Gene: 666049
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:143321632-143324181 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 77.80 cM

Strain
Comparison

• SNPs within 2kb
  35 from dbSNP Build 142
• Strain Annotations
  6

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650002	pseudogene	Chr4:143321299-143327565 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	MGP_AKRJ_G0040294	pseudogene	Chr4:144480535-144483124 (-)
BALB/cJ	MGP_BALBcJ_G0040367	pseudogene	Chr4:141117610-141120953 (-)
C3H/HeJ	MGP_C3HHeJ_G0039990	pseudogene	Chr4:145309690-145321178 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040969	pseudogene	Chr4:152176246-152178805 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0040161	pseudogene	Chr4:140779779-140783808 (-)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm13058
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13058
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  1

• Ensembl
  ENSMUSG00000081523 (Evidence)
• NCBI Gene
  666049

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081523	Ensembl Gene Model | MGI Sequence Detail	2550	C57BL/6J
transcript	ENSMUST00000117097	Ensembl | MGI Sequence Detail	1424	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;