Gm13589 Gene Detail

Summary

• Symbol
  Gm13589
• Name
  predicted gene 13589

• Feature Type
  lncRNA gene
• IDs
  MGI:3649991
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr2:38313919-38415010 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 24.36 cM

Strain
Comparison

• SNPs within 2kb
  2547 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649991	lncRNA gene	Chr2:38313919-38415010 (+)
129S1/SvImJ	ENSMUSG00200048143	lncRNA gene	Chr2:35294366-35326212 (+)
A/J	ENSMUSG00195042004	lncRNA gene	Chr2:35405946-35437808 (+)
AKR/J	ENSMUSG00220045100	lncRNA gene	Chr2:35520933-35552794 (+)
BALB/cJ	ENSMUSG00180049115	lncRNA gene	Chr2:35417576-35449435 (+)
C3H/HeJ	ENSMUSG00175044612	lncRNA gene	Chr2:35404417-35436263 (+)
C57BL/6NJ	ENSMUSG00215046727	lncRNA gene	Chr2:35458688-35490541 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005367	lincRNA gene	Chr2:34301475-34333637 (+)
CAST/EiJ	ENSTCUG00005018190	lncRNA gene	Chr2:35120530-35155316 (+)
CBA/J	ENSMUSG00210050202	lncRNA gene	Chr2:35458807-35490657 (+)
DBA/2J	ENSMUSG00185047980	lncRNA gene	Chr2:35318578-35350423 (+)
FVB/NJ	ENSMUSG00205038294	lncRNA gene	Chr2:35123617-35155471 (+)
JF1/MsJ	ENSUMUG00000016370	lncRNA gene	Chr2:35195633-35227285 (+)
LP/J	ENSMUSG00230048128	lncRNA gene	Chr2:37238821-37270668 (+)
NOD/ShiLtJ	ENSMUSG00190043647	lncRNA gene	Chr2:35319755-35351607 (+)
NZO/HlLtJ	ENSMUSG00225050552	lncRNA gene	Chr2:45002405-45034250 (+)
PWK/PhJ	ENSLUMG00010044814	lncRNA gene	Chr2:35331817-35363618 (+)
SPRET/EiJ	ENSMSPG00010043659	lncRNA gene	Chr2:36007774-36038472 (+)
WSB/EiJ	ENSIUOG00005041557	lncRNA gene	Chr2:35316903-35348763 (+)

Homology

• Gene Tree
  Gm13589
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  40
• Gene trapped
  40
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29

• Ensembl
  ENSMUSG00000085950 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085950	Ensembl Gene Model | MGI Sequence Detail	101092	C57BL/6J
transcript	ENSMUST00000146404	Ensembl | MGI Sequence Detail	1770	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm13589:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17544	Chr2:38322543-38322546 (+)	8,626 bp
Tssr17545	Chr2:38362164-38362181 (+)	48,254 bp
Tssr17546	Chr2:38362206-38362220 (+)	48,294 bp
Tssr17547	Chr2:38363136-38363148 (+)	49,223 bp
Tssr17548	Chr2:38371383-38371398 (+)	57,472 bp