Gm12648 Gene Detail

Summary

• Symbol
  Gm12648
• Name
  predicted gene 12648

• Feature Type
  lncRNA gene
• IDs
  MGI:3649948
  NCBI Gene: 108168967
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr4:93977813-94313825 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 43.27 cM

Strain
Comparison

• SNPs within 2kb
  7512 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649948	lncRNA gene	Chr4:93976375-94313825 (-)
129S1/SvImJ	ENSMUSG00200010907	lncRNA gene	Chr4:88958348-89292084 (-)
A/J	ENSMUSG00195009718	lncRNA gene	Chr4:89506492-89841109 (-)
AKR/J	ENSMUSG00220020436	lncRNA gene	Chr4:88910100-89246335 (-)
BALB/cJ	ENSMUSG00180006544	lncRNA gene	Chr4:88453880-88788457 (-)
C3H/HeJ	ENSMUSG00175008377	lncRNA gene	Chr4:89393116-89727747 (-)
C57BL/6NJ	ENSMUSG00215023197	lncRNA gene	Chr4:89346157-89682023 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019755	lncRNA gene	Chr4:88775123-89119989 (-)
CBA/J	ENSMUSG00210016781	lncRNA gene	Chr4:88969758-89304331 (-)
DBA/2J	ENSMUSG00185003010	lncRNA gene	Chr4:89735845-90071693 (-)
FVB/NJ	ENSMUSG00205014655	lncRNA gene	Chr4:87899768-88234069 (-)
JF1/MsJ	ENSUMUG00000003896	lncRNA gene	Chr4:89880868-90222518 (-)
LP/J	ENSMUSG00230023526	lncRNA gene	Chr4:93069181-93402893 (-)
NOD/ShiLtJ	ENSMUSG00190018012	lncRNA gene	Chr4:88407919-88742471 (-)
NZO/HlLtJ	ENSMUSG00225003364	lncRNA gene	Chr4:98198013-98533875 (-)
PWK/PhJ	ENSLUMG00010003832	lncRNA gene	Chr4:87625508-87968551 (-)
SPRET/EiJ	ENSMSPG00010015830	lncRNA gene	Chr4:89575877-89960412 (-)
WSB/EiJ	ENSIUOG00005013134	lncRNA gene	Chr4:88729002-89063670 (-)

Homology

• Gene Tree
  Gm12648
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12648
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2

• Ensembl
  ENSMUSG00000085931 (Evidence)
• NCBI Gene
  108168967

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085931	Ensembl Gene Model | MGI Sequence Detail	336013	C57BL/6J
transcript	ENSMUST00000275525	Ensembl | MGI Sequence Detail	776	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm12648:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1231	Chr4:94219891-94219892 (-)	93,933 bp
Tssr42438	Chr4:94219850-94219863 (-)	93,968 bp
Tssr42437	Chr4:94219829-94219839 (-)	93,991 bp
Tssr42436	Chr4:94217665-94217669 (-)	96,158 bp
Tssr42435	Chr4:94216089-94216094 (-)	97,733 bp