Gm13421 Gene Detail

Summary

• Symbol
  Gm13421
• Name
  predicted gene 13421

• Feature Type
  lncRNA gene
• IDs
  MGI:3649922
  NCBI Gene: 105244102
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:27430438-27436102 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 19.38 cM

Strain
Comparison

• SNPs within 2kb
  318 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649922	lncRNA gene	Chr2:27430158-27436104 (+)
129S1/SvImJ	ENSMUSG00200053525	lncRNA gene	Chr2:24390603-24396278 (+)
A/J	ENSMUSG00195051380	lncRNA gene	Chr2:24493016-24498691 (+)
AKR/J	ENSMUSG00220053800	lncRNA gene	Chr2:24610761-24616436 (+)
BALB/cJ	ENSMUSG00180054444	lncRNA gene	Chr2:24512007-24517682 (+)
C3H/HeJ	ENSMUSG00175053829	lncRNA gene	Chr2:24481340-24487015 (+)
C57BL/6NJ	ENSMUSG00215050435	lncRNA gene	Chr2:24540097-24545772 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013538	unclassified non-coding RNA gene	Chr2:23394611-23397945 (+)
CAST/EiJ	ENSTCUG00005053522	lncRNA gene	Chr2:24228247-24233948 (+)
CBA/J	ENSMUSG00210018190	lncRNA gene	Chr2:24514979-24520654 (+)
DBA/2J	ENSMUSG00185053555	lncRNA gene	Chr2:24407036-24412711 (+)
FVB/NJ	ENSMUSG00205050633	lncRNA gene	Chr2:24258847-24264521 (+)
JF1/MsJ	ENSUMUG00000056461	lncRNA gene	Chr2:24315104-24320769 (+)
LP/J	ENSMUSG00230045886	lncRNA gene	Chr2:26326501-26332176 (+)
NOD/ShiLtJ	ENSMUSG00190053058	lncRNA gene	Chr2:24499948-24505620 (+)
NZO/HlLtJ	ENSMUSG00225011242	lncRNA gene	Chr2:34083976-34089651 (+)
PWK/PhJ	ENSLUMG00010052455	lncRNA gene	Chr2:24393583-24399246 (+)
SPRET/EiJ	ENSMSPG00010046038	lncRNA gene	Chr2:25125088-25130728 (+)
WSB/EiJ	ENSIUOG00005052679	lncRNA gene	Chr2:24363423-24369094 (+)

Homology

• Gene Tree
  Gm13421
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  15
• Gene trapped
  15
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  2

• Ensembl
  ENSMUSG00000085929 (Evidence)
• NCBI Gene
  105244102

Representative Sequences			Length	Strain/Species
genomic	105244102	NCBI Gene Model | MGI Sequence Detail	5665	C57BL/6J
transcript	NR_166126	RefSeq | MGI Sequence Detail	3531	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm13421:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16857	Chr2:27430431-27430475 (+)	15 bp
Tssr16858	Chr2:27434860-27434887 (+)	4,436 bp