Gm12408 Gene Detail

Summary

• Symbol
  Gm12408
• Name
  predicted gene 12408

• Feature Type
  lncRNA gene
• IDs
  MGI:3649921
  NCBI Gene: 100040557
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:45639936-45642224 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 24.11 cM

Strain
Comparison

• SNPs within 2kb
  245 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649921	lncRNA gene	Chr4:45591582-45646116 (+)
129S1/SvImJ	ENSMUSG00200003453	lncRNA gene	Chr4:41694536-41700894 (+)
A/J	ENSMUSG00195006615	lncRNA gene	Chr4:42159463-42165817 (+)
AKR/J	ENSMUSG00220002752	lncRNA gene	Chr4:41839110-41845477 (+)
BALB/cJ	ENSMUSG00180030074	lncRNA gene	Chr4:41746154-41752508 (+)
C3H/HeJ	ENSMUSG00175021239	lncRNA gene	Chr4:41895690-41902044 (+)
C57BL/6NJ	ENSMUSG00215022907	lncRNA gene	Chr4:41662364-41668731 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005836	lincRNA gene	Chr4:39703395-39705889 (+)
CAST/EiJ	ENSTCUG00005038785	lncRNA gene	Chr4:41918355-41924801 (+)
CBA/J	ENSMUSG00210019562	lncRNA gene	Chr4:41575663-41582021 (+)
DBA/2J	ENSMUSG00185034709	lncRNA gene	Chr4:41939070-41945428 (+)
FVB/NJ	ENSMUSG00205022469	lncRNA gene	Chr4:41208106-41214474 (+)
JF1/MsJ	ENSUMUG00000037499	lncRNA gene	Chr4:42165970-42172573 (+)
LP/J	ENSMUSG00230042926	lncRNA gene	Chr4:45495589-45501947 (+)
NOD/ShiLtJ	ENSMUSG00190025665	lncRNA gene	Chr4:41797282-41803649 (+)
NZO/HlLtJ	ENSMUSG00225007048	lncRNA gene	Chr4:50090051-50096418 (+)
PWK/PhJ	ENSLUMG00010012971	lncRNA gene	Chr4:41168783-41175518 (+)
SPRET/EiJ	ENSMSPG00010009502	lncRNA gene	Chr4:42091492-42098177 (+)
WSB/EiJ	ENSIUOG00005004808	lncRNA gene	Chr4:41558363-41564726 (+)

Homology

• Gene Tree
  Gm12408
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  49
• RefSeq
  1

• Ensembl
  ENSMUSG00000085980 (Evidence)
• NCBI Gene
  100040557

Representative Sequences			Length	Strain/Species
genomic	100040557	NCBI Gene Model | MGI Sequence Detail	2289	C57BL/6J
transcript	NR_151513	RefSeq | MGI Sequence Detail	929	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 8
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm12408:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37068	Chr4:45640777-45640790 (+)	848 bp