Gm12592 Gene Detail

Summary

• Symbol
  Gm12592
• Name
  predicted gene 12592

• Feature Type
  lncRNA gene
• IDs
  MGI:3649892
  NCBI Gene: 791413
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:3255420-3281190 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 2.32 cM

Strain
Comparison

• SNPs within 2kb
  532 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649892	lncRNA gene	Chr11:3255420-3282293 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015145	unclassified non-coding RNA gene	Chr11:154830-182798 (-)
A/J	MGP_AJ_G0015119	unclassified non-coding RNA gene	Chr11:218437-244807 (-)
AKR/J	MGP_AKRJ_G0015082	unclassified non-coding RNA gene	Chr11:224042-252168 (-)
BALB/cJ	MGP_BALBcJ_G0015082	unclassified non-coding RNA gene	Chr11:191159-216874 (-)
C3H/HeJ	MGP_C3HHeJ_G0014905	unclassified non-coding RNA gene	Chr11:167114-192693 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015538	unclassified non-coding RNA gene	Chr11:220855-250893 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013284	unclassified non-coding RNA gene	Chr11:134979-161560 (-)
CAST/EiJ	MGP_CASTEiJ_G0014459	unclassified non-coding RNA gene	Chr11:114716-143395 (-)
CBA/J	MGP_CBAJ_G0014884	unclassified non-coding RNA gene	Chr11:391512-417193 (-)
DBA/2J	MGP_DBA2J_G0014977	unclassified non-coding RNA gene	Chr11:140688-166255 (-)
FVB/NJ	MGP_FVBNJ_G0014988	unclassified non-coding RNA gene	Chr11:165986-192156 (-)
LP/J	MGP_LPJ_G0015059	unclassified non-coding RNA gene	Chr11:261269-289594 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015015	unclassified non-coding RNA gene	Chr11:144658-173000 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015577	unclassified non-coding RNA gene	Chr11:230058-258666 (-)
PWK/PhJ	MGP_PWKPhJ_G0014251	unclassified non-coding RNA gene	Chr11:114096-140996 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014039	unclassified non-coding RNA gene	Chr11:187412-220023 (-)
WSB/EiJ	MGP_WSBEiJ_G0014562	unclassified non-coding RNA gene	Chr11:110816-137113 (-)

Homology

• Gene Tree
  Gm12592
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000053263 (Evidence)
• NCBI Gene
  791413

Representative Sequences			Length	Strain/Species
genomic	791413	NCBI Gene Model | MGI Sequence Detail	25771	C57BL/6J
transcript	NR_165248	RefSeq | MGI Sequence Detail	2972	C57BL/6
polypeptide	Q8CE53	UniProt | EBI | MGI Sequence Detail	120	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm12592:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106461	Chr11:3282277-3282301 (-)	-1,099 bp
Tssr106460	Chr11:3282253-3282276 (-)	-1,075 bp
Tssr106459	Chr11:3281180-3281201 (-)	-1 bp