Gm11269 Gene Detail

Summary

• Symbol
  Gm11269
• Name
  predicted gene 11269

• Feature Type
  lncRNA gene
• IDs
  MGI:3649855
  NCBI Gene: 102635985
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:82610949-82612376 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 39.40 cM

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649855	lncRNA gene	Chr4:82610030-82612424 (+)
129S1/SvImJ	ENSMUSG00200000889	lncRNA gene	Chr4:77541056-77541962 (+)
A/J	ENSMUSG00195006081	lncRNA gene	Chr4:78138277-78139183 (+)
AKR/J	ENSMUSG00220007938	lncRNA gene	Chr4:77522752-77523658 (+)
BALB/cJ	ENSMUSG00180008456	lncRNA gene	Chr4:77098221-77099127 (+)
C3H/HeJ	ENSMUSG00175004123	lncRNA gene	Chr4:78016452-78017358 (+)
C57BL/6NJ	ENSMUSG00215002325	lncRNA gene	Chr4:77973334-77974240 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003517	antisense lncRNA gene	Chr4:75393839-75394718 (+)
CAST/EiJ	ENSTCUG00005000911	lncRNA gene	Chr4:77481510-77482389 (+)
CBA/J	ENSMUSG00210001190	lncRNA gene	Chr4:77610012-77610918 (+)
DBA/2J	ENSMUSG00185000759	lncRNA gene	Chr4:78216041-78216947 (+)
FVB/NJ	ENSMUSG00205001546	lncRNA gene	Chr4:76455316-76456222 (+)
JF1/MsJ	ENSUMUG00000030389	lncRNA gene	Chr4:78519293-78520172 (+)
LP/J	ENSMUSG00230008737	lncRNA gene	Chr4:81622614-81623520 (+)
NOD/ShiLtJ	ENSMUSG00190000930	lncRNA gene	Chr4:77054042-77054948 (+)
NZO/HlLtJ	ENSMUSG00225005602	lncRNA gene	Chr4:86726411-86727317 (+)
PWK/PhJ	ENSLUMG00010001694	lncRNA gene	Chr4:76330998-76331879 (+)
SPRET/EiJ	ENSMSPG00010008039	lncRNA gene	Chr4:78002569-78003511 (+)
WSB/EiJ	ENSIUOG00005009807	lncRNA gene	Chr4:77430871-77431777 (+)

Homology

• Gene Tree
  Gm11269
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm11269
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000086293 (Evidence)
• NCBI Gene
  102635985

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086293	Ensembl Gene Model | MGI Sequence Detail	1428	C57BL/6J
transcript	ENSMUST00000157011	Ensembl | MGI Sequence Detail	1095	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm11269:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37686	Chr4:82610988-82611004 (+)	47 bp
Tssr37687	Chr4:82611005-82611013 (+)	60 bp