Gm12346 Pseudogene Detail

Summary

• Symbol
  Gm12346
• Name
  predicted gene 12346
• Synonyms
  EG544800

• Feature Type
  pseudogene
• IDs
  MGI:3649810
  NCBI Gene: 544800
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:77184270-77186724 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 46.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649810	pseudogene	Chr11:77184264-77187024 (+)
129S1/SvImJ	ENSMUSG00200051417	pseudogene	Chr11:74300968-74303422 (+)
A/J	ENSMUSG00195044879	pseudogene	Chr11:74179517-74181971 (+)
AKR/J	ENSMUSG00220049023	pseudogene	Chr11:74404426-74406880 (+)
BALB/cJ	ENSMUSG00180044855	pseudogene	Chr11:74368480-74370934 (+)
C3H/HeJ	ENSMUSG00175041483	pseudogene	Chr11:74337808-74340262 (+)
C57BL/6NJ	ENSMUSG00215042255	pseudogene	Chr11:73961696-73964150 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210047949	pseudogene	Chr11:74156236-74158690 (+)
DBA/2J	ENSMUSG00185039788	pseudogene	Chr11:74426218-74428672 (+)
FVB/NJ	ENSMUSG00205048069	pseudogene	Chr11:74263447-74265901 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230049768	pseudogene	Chr11:75456753-75459207 (+)
NOD/ShiLtJ	ENSMUSG00190048294	pseudogene	Chr11:74473364-74475818 (+)
NZO/HlLtJ	ENSMUSG00225039502	pseudogene	Chr11:77624230-77626684 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005035997	pseudogene	Chr11:74310772-74313853 (+)

Homology

• Gene Tree
  Gm12346
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12346
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000083899 (Evidence)
• NCBI Gene
  544800

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083899	Ensembl Gene Model | MGI Sequence Detail	2455	C57BL/6J
transcript	ENSMUST00000121455	Ensembl | MGI Sequence Detail	2255	Not Applicable

Other
Accession IDs

MGI:3648415

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm12346:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103129	Chr11:77184821-77184825 (+)	553 bp
Tssr103130	Chr11:77184861-77184907 (+)	614 bp