Rps11-ps3 Pseudogene Detail

Summary

• Symbol
  Rps11-ps3
• Name
  ribosomal protein S11, pseudogene 3
• Synonyms
  Gm11828

• Feature Type
  pseudogene
• IDs
  MGI:3649802
  NCBI Gene: 383992
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:10946608-10947093 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 4.86 cM

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649802	pseudogene	Chr4:10946582-10947118 (+)
129S1/SvImJ	ENSMUSG00200001557	pseudogene	Chr4:7586298-7586783 (+)
A/J	ENSMUSG00195002813	pseudogene	Chr4:8021184-8021669 (+)
AKR/J	ENSMUSG00220001294	pseudogene	Chr4:7770030-7770515 (+)
BALB/cJ	ENSMUSG00180004775	pseudogene	Chr4:7548125-7548610 (+)
C3H/HeJ	ENSMUSG00175017875	pseudogene	Chr4:8061186-8061671 (+)
C57BL/6NJ	ENSMUSG00215004544	pseudogene	Chr4:7690792-7691277 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026694	pseudogene	Chr4:7742816-7743299 (+)
CBA/J	ENSMUSG00210002550	pseudogene	Chr4:7800910-7801395 (+)
DBA/2J	ENSMUSG00185002636	pseudogene	Chr4:7910138-7910623 (+)
FVB/NJ	ENSMUSG00205003416	pseudogene	Chr4:7577545-7578030 (+)
JF1/MsJ	ENSUMUG00000002750	pseudogene	Chr4:8010526-8011009 (+)
LP/J	ENSMUSG00230001345	pseudogene	Chr4:11097833-11098318 (+)
NOD/ShiLtJ	ENSMUSG00190014015	pseudogene	Chr4:7648736-7649221 (+)
NZO/HlLtJ	ENSMUSG00225008585	pseudogene	Chr4:15108695-15109180 (+)
PWK/PhJ	ENSLUMG00010005939	pseudogene	Chr4:7497424-7497907 (+)
SPRET/EiJ	ENSMSPG00010003186	pseudogene	Chr4:7856687-7857170 (+)
WSB/EiJ	ENSIUOG00005014494	pseudogene	Chr4:7579273-7579758 (+)

Homology

• Gene Tree
  Rps11-ps3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000081715 (Evidence)
• NCBI Gene
  383992

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081715	Ensembl Gene Model | MGI Sequence Detail	486	C57BL/6J
transcript	ENSMUST00000117608	Ensembl | MGI Sequence Detail	486	Not Applicable

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Rps11-ps3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36461	Chr4:10946584-10946598 (+)	-17 bp