Gm11827 Gene Detail

Summary

• Symbol
  Gm11827
• Name
  predicted gene 11827

• Feature Type
  lncRNA gene
• IDs
  MGI:3649801
  NCBI Gene: 100503518
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:11123958-11126998 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 4.99 cM

Strain
Comparison

• SNPs within 2kb
  206 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649801	lncRNA gene	Chr4:11122805-11127004 (+)
129S1/SvImJ	ENSMUSG00200001431	lncRNA gene	Chr4:7760562-7764757 (+)
A/J	ENSMUSG00195003017	lncRNA gene	Chr4:8196050-8200252 (+)
AKR/J	ENSMUSG00220001440	lncRNA gene	Chr4:7951162-7955357 (+)
BALB/cJ	ENSMUSG00180004614	lncRNA gene	Chr4:7722395-7726590 (+)
C3H/HeJ	ENSMUSG00175017333	lncRNA gene	Chr4:8240327-8244516 (+)
C57BL/6NJ	ENSMUSG00215004574	lncRNA gene	Chr4:7866922-7871115 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005808	lincRNA gene	Chr4:7163647-7167973 (+)
CAST/EiJ	ENSTCUG00005026400	lncRNA gene	Chr4:7920379-7924619 (+)
CBA/J	ENSMUSG00210002589	lncRNA gene	Chr4:7980062-7984253 (+)
DBA/2J	ENSMUSG00185002545	lncRNA gene	Chr4:8089288-8093477 (+)
FVB/NJ	ENSMUSG00205003600	lncRNA gene	Chr4:7751812-7756007 (+)
JF1/MsJ	ENSUMUG00000002897	lncRNA gene	Chr4:8190248-8194472 (+)
LP/J	ENSMUSG00230001200	lncRNA gene	Chr4:11272096-11276291 (+)
NOD/ShiLtJ	ENSMUSG00190014448	lncRNA gene	Chr4:7823558-7827760 (+)
NZO/HlLtJ	ENSMUSG00225008469	lncRNA gene	Chr4:15283036-15287231 (+)
PWK/PhJ	ENSLUMG00010006056	lncRNA gene	Chr4:7669672-7673873 (+)
SPRET/EiJ	ENSMSPG00010003318	lncRNA gene	Chr4:8026971-8031148 (+)
WSB/EiJ	ENSIUOG00005014690	lncRNA gene	Chr4:7760506-7764691 (+)

Homology

• Gene Tree
  Gm11827
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  1

• Ensembl
  ENSMUSG00000086765 (Evidence)
• NCBI Gene
  100503518

Representative Sequences			Length	Strain/Species
genomic	100503518	NCBI Gene Model | MGI Sequence Detail	3041	C57BL/6J
transcript	NR_151526	RefSeq | MGI Sequence Detail	1273	Not Specified

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm11827:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36462	Chr4:11123950-11123980 (+)	7 bp