Gm12230 Pseudogene Detail

Summary

• Symbol
  Gm12230
• Name
  predicted gene 12230

• Feature Type
  pseudogene
• IDs
  MGI:3649746
  NCBI Gene: 102633817
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:54838261-54838714 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 32.13 cM

Strain
Comparison

• SNPs within 2kb
  150 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649746	pseudogene	Chr11:54837072-54838770 (+)
129S1/SvImJ	ENSMUSG00200037050	pseudogene	Chr11:51834632-51835085 (+)
A/J	ENSMUSG00195043637	pseudogene	Chr11:51771972-51772425 (+)
AKR/J	ENSMUSG00220050161	pseudogene	Chr11:51967915-51968368 (+)
BALB/cJ	ENSMUSG00180050176	pseudogene	Chr11:51837157-51837610 (+)
C3H/HeJ	ENSMUSG00175049101	pseudogene	Chr11:51803231-51803684 (+)
C57BL/6NJ	ENSMUSG00215040837	pseudogene	Chr11:51626107-51626560 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045050	pseudogene	Chr11:51394152-51394605 (+)
CBA/J	ENSMUSG00210040665	pseudogene	Chr11:51659102-51659555 (+)
DBA/2J	ENSMUSG00185044098	pseudogene	Chr11:51870050-51870503 (+)
FVB/NJ	ENSMUSG00205051007	pseudogene	Chr11:51703848-51704301 (+)
JF1/MsJ	ENSUMUG00000052592	pseudogene	Chr11:52239717-52240170 (+)
LP/J	ENSMUSG00230050181	pseudogene	Chr11:53052214-53052667 (+)
NOD/ShiLtJ	ENSMUSG00190052561	pseudogene	Chr11:51914551-51915004 (+)
NZO/HlLtJ	ENSMUSG00225032870	pseudogene	Chr11:55092087-55092540 (+)
PWK/PhJ	ENSLUMG00010035382	pseudogene	Chr11:51684841-51685294 (+)
SPRET/EiJ	ENSMSPG00010041539	pseudogene	Chr11:52379989-52380442 (+)
WSB/EiJ	ENSIUOG00005038033	pseudogene	Chr11:51714930-51715383 (+)

Homology

• Gene Tree
  Gm12230
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm12230
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082180 (Evidence)
• NCBI Gene
  102633817

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082180	Ensembl Gene Model | MGI Sequence Detail	454	C57BL/6J
transcript	ENSMUST00000118301	Ensembl | MGI Sequence Detail	454	Not Applicable

References

• Summaries
  All 10

  Diseases 1

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:155870 Barlow JL, et al., A p53-dependent mechanism underlies macrocytic anemia in a mouse model of human 5q- syndrome. Nat Med. 2010 Jan;16(1):59-66