Gm13077 Pseudogene Detail

Summary

• Symbol
  Gm13077
• Name
  predicted gene 13077
• Synonyms
  Gm20377

• Feature Type
  pseudogene
• IDs
  MGI:3649703
  NCBI Gene: 100504731
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:152241464-152241947 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 82.92 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649703	pseudogene	Chr4:152240506-152242021 (-)
129S1/SvImJ	ENSMUSG00200019711	pseudogene	Chr4:143308365-143308848 (-)
A/J	ENSMUSG00195020654	pseudogene	Chr4:144942940-144943423 (-)
AKR/J	ENSMUSG00220028445	pseudogene	Chr4:144529480-144529963 (-)
BALB/cJ	ENSMUSG00180002584	pseudogene	Chr4:142625099-142625582 (-)
C3H/HeJ	ENSMUSG00175019856	pseudogene	Chr4:145910019-145910502 (-)
C57BL/6NJ	ENSMUSG00215030160	pseudogene	Chr4:144753586-144754069 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035161	pseudogene	Chr4:148630629-148631119 (-)
CBA/J	ENSMUSG00210006304	pseudogene	Chr4:144561650-144562133 (-)
DBA/2J	ENSMUSG00185017133	pseudogene	Chr4:148126592-148127075 (-)
FVB/NJ	ENSMUSG00205023001	pseudogene	Chr4:143023179-143023662 (-)
JF1/MsJ	ENSUMUG00000008518	pseudogene	Chr4:151147999-151148497 (-)
LP/J	ENSMUSG00230025839	pseudogene	Chr4:154859738-154860221 (-)
NOD/ShiLtJ	ENSMUSG00190004343	pseudogene	Chr4:144225811-144226294 (-)
NZO/HlLtJ	ENSMUSG00225024577	pseudogene	Chr4:158853187-158853670 (-)
PWK/PhJ	ENSLUMG00010028150	pseudogene	Chr4:143425577-143426074 (-)
SPRET/EiJ	ENSMSPG00010025365	pseudogene	Chr4:145354520-145355116 (-)
WSB/EiJ	ENSIUOG00005006720	pseudogene	Chr4:142436503-142436986 (-)

Homology

• Gene Tree
  Gm13077
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving Gm13077
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000081544 (Evidence)
• NCBI Gene
  100504731

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081544	Ensembl Gene Model | MGI Sequence Detail	484	C57BL/6J
transcript	ENSMUST00000121941	Ensembl | MGI Sequence Detail	484	Not Applicable

Other
Accession IDs

MGI:5012562

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:121726 Bagchi A, et al., CHD5 is a tumor suppressor at human 1p36. Cell. 2007 Feb 9;128(3):459-75
• Latest
  J:196071 van der Weyden L, et al., Cancer of mice and men: old twists and new tails. J Pathol. 2013 May;230(1):4-16