Gm12802 Gene Detail

Summary

• Symbol
  Gm12802
• Name
  predicted gene 12802

• Feature Type
  lncRNA gene
• IDs
  MGI:3649683
  NCBI Gene: 100034661
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr4:106983810-106993449 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 50.06 cM

Strain
Comparison

• SNPs within 2kb
  362 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649683	lncRNA gene	Chr4:106983810-106993449 (+)
129S1/SvImJ	ENSMUSG00200049814	lncRNA gene	Chr4:102042915-102052561 (+)
A/J	ENSMUSG00195047136	lncRNA gene	Chr4:102585779-102595426 (+)
AKR/J	ENSMUSG00220012650	lncRNA gene	Chr4:101994113-102003751 (+)
BALB/cJ	ENSMUSG00180046731	lncRNA gene	Chr4:101429007-101438647 (+)
C3H/HeJ	ENSMUSG00175043980	lncRNA gene	Chr4:102433518-102443155 (+)
C57BL/6NJ	ENSMUSG00215033243	lncRNA gene	Chr4:102315846-102325491 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003533	antisense lncRNA gene	Chr4:99214820-99224391 (+)
CAST/EiJ	ENSTCUG00005007471	lncRNA gene	Chr4:101534828-101544477 (+)
CBA/J	ENSMUSG00210053497	lncRNA gene	Chr4:102066535-102076172 (+)
DBA/2J	ENSMUSG00185050842	lncRNA gene	Chr4:102762515-102772156 (+)
FVB/NJ	ENSMUSG00205016246	lncRNA gene	Chr4:100997450-101007095 (+)
JF1/MsJ	ENSUMUG00000047491	lncRNA gene	Chr4:102779286-102789012 (+)
LP/J	ENSMUSG00230009848	lncRNA gene	Chr4:106079375-106089020 (+)
NOD/ShiLtJ	ENSMUSG00190049176	lncRNA gene	Chr4:101436327-101445962 (+)
NZO/HlLtJ	ENSMUSG00225032993	lncRNA gene	Chr4:111181100-111190738 (+)
PWK/PhJ	ENSLUMG00010018859	lncRNA gene	Chr4:100497966-100507612 (+)
SPRET/EiJ	ENSMSPG00010029103	lncRNA gene	Chr4:102747675-102757072 (+)
WSB/EiJ	ENSIUOG00005044008	lncRNA gene	Chr4:101644476-101654113 (+)

Homology

• Gene Tree
  Gm12802
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12802
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2

• Ensembl
  ENSMUSG00000085304 (Evidence)
• NCBI Gene
  100034661

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085304	Ensembl Gene Model | MGI Sequence Detail	9640	C57BL/6J
transcript	ENSMUST00000145510	Ensembl | MGI Sequence Detail	1813	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 13

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Gm12802:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38216	Chr4:106983814-106983819 (+)	7 bp
Tssr38217	Chr4:106983869-106983886 (+)	68 bp
Tssr38218	Chr4:106983895-106983913 (+)	94 bp
Tssr38219	Chr4:106984224-106984227 (+)	416 bp
Tssr38220	Chr4:106985142-106985146 (+)	1,334 bp
Tssr38221	Chr4:106992328-106992332 (+)	8,520 bp