Gm12571 Pseudogene Detail

Summary

• Symbol
  Gm12571
• Name
  predicted gene 12571

• Feature Type
  pseudogene
• IDs
  MGI:3649675
  NCBI Gene: 100043525
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:78040022-78040264 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 46.74 cM

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649675	pseudogene	Chr11:78039850-78040334 (-)
129S1/SvImJ	ENSMUSG00200051300	pseudogene	Chr11:75156908-75157150 (-)
A/J	ENSMUSG00195046620	pseudogene	Chr11:75035680-75035922 (-)
A/J	ENSMUSG00195023584	pseudogene	Chr2:154843952-154844194 (+)
AKR/J	ENSMUSG00220048717	pseudogene	Chr11:75259598-75259840 (-)
BALB/cJ	ENSMUSG00180043507	pseudogene	Chr11:75224460-75224702 (-)
C3H/HeJ	ENSMUSG00175041120	pseudogene	Chr11:75193684-75193926 (-)
C57BL/6NJ	ENSMUSG00215043220	pseudogene	Chr11:74817693-74817935 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012225	pseudogene	Chr7:101124799-101125042 (+)
CAST/EiJ	ENSTCUG00005045528	pseudogene	Chr11:74715599-74715841 (-)
CBA/J	ENSMUSG00210047548	pseudogene	Chr11:75012118-75012360 (-)
DBA/2J	ENSMUSG00185041718	pseudogene	Chr11:75282149-75282391 (-)
FVB/NJ	ENSMUSG00205047248	pseudogene	Chr11:75111720-75111962 (-)
JF1/MsJ	ENSUMUG00000052737	pseudogene	Chr11:75659947-75660189 (-)
LP/J	ENSMUSG00230049709	pseudogene	Chr11:76312629-76312871 (-)
NOD/ShiLtJ	ENSMUSG00190048592	pseudogene	Chr11:75329215-75329457 (-)
NZO/HlLtJ	ENSMUSG00225039425	pseudogene	Chr11:78480104-78480346 (-)
PWK/PhJ	ENSLUMG00010026400	pseudogene	Chr11:75185050-75185292 (-)
SPRET/EiJ	ENSMSPG00010045286	pseudogene	Chr11:75596051-75596294 (-)
WSB/EiJ	ENSIUOG00005037056	pseudogene	Chr11:75167357-75167599 (-)

Homology

• Gene Tree
  Gm12571
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12571
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000060727 (Evidence)
• NCBI Gene
  100043525

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000060727	Ensembl Gene Model | MGI Sequence Detail	243	C57BL/6J
transcript	ENSMUST00000118132	Ensembl | MGI Sequence Detail	243	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm12571:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3586	Chr11:78040286-78040311 (-)	-35 bp