Gm13546 Gene Detail

Summary

• Symbol
  Gm13546
• Name
  predicted gene 13546

• Feature Type
  lncRNA gene
• IDs
  MGI:3649666
  NCBI Gene: 100042926
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:58053986-58067075 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 33.05 cM

Strain
Comparison

• SNPs within 2kb
  526 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649666	lncRNA gene	Chr2:58049275-58067075 (+)
129S1/SvImJ	ENSMUSG00200003170	lncRNA gene	Chr2:55125887-55135157 (+)
A/J	ENSMUSG00195005232	lncRNA gene	Chr2:55246295-55255565 (+)
AKR/J	ENSMUSG00220007486	lncRNA gene	Chr2:55348308-55357578 (+)
BALB/cJ	ENSMUSG00180021240	lncRNA gene	Chr2:55194510-55207584 (+)
C3H/HeJ	ENSMUSG00175013845	lncRNA gene	Chr2:55271324-55280594 (+)
C57BL/6NJ	ENSMUSG00215009570	lncRNA gene	Chr2:55243143-55256215 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003180	antisense lncRNA gene	Chr2:53081541-53094897 (+)
CAST/EiJ	ENSTCUG00005023371	lncRNA gene	Chr2:54600942-54613973 (+)
CBA/J	ENSMUSG00210034858	lncRNA gene	Chr2:55290799-55300069 (+)
DBA/2J	ENSMUSG00185008519	lncRNA gene	Chr2:55146750-55156020 (+)
FVB/NJ	ENSMUSG00205021979	lncRNA gene	Chr2:54787393-54796663 (+)
JF1/MsJ	ENSUMUG00000024323	lncRNA gene	Chr2:54844647-54857671 (+)
LP/J	ENSMUSG00230001839	lncRNA gene	Chr2:57001394-57014466 (+)
NOD/ShiLtJ	ENSMUSG00190045222	lncRNA gene	Chr2:55228120-55237390 (+)
NZO/HlLtJ	ENSMUSG00225001153	lncRNA gene	Chr2:64720767-64733836 (+)
PWK/PhJ	ENSLUMG00010005714	lncRNA gene	Chr2:55004510-55023638 (+)
SPRET/EiJ	ENSMSPG00010012082	lncRNA gene	Chr2:56113324-56132666 (+)
WSB/EiJ	ENSIUOG00005028255	lncRNA gene	Chr2:55225653-55246630 (+)

Homology

• Gene Tree
  Gm13546
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13546
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  2

• Ensembl
  ENSMUSG00000086862 (Evidence)
• NCBI Gene
  100042926

Representative Sequences			Length	Strain/Species
genomic	100042926	NCBI Gene Model | MGI Sequence Detail	13090	C57BL/6J
transcript	NR_045895	RefSeq | MGI Sequence Detail	1016	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm13546:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17823	Chr2:58053963-58054008 (+)	0 bp