Gm13249 Pseudogene Detail

Summary

• Symbol
  Gm13249
• Name
  predicted gene 13249

• Feature Type
  pseudogene
• IDs
  MGI:3649659
  NCBI Gene: 384081
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:145373341-145373685 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 78.23 cM

Strain
Comparison

• SNPs within 2kb
  7 from dbSNP Build 142
• Strain Annotations
  28

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649659	pseudogene	Chr4:145373341-145373685 (-)
129S1/SvImJ	ENSMUSG00200047028	pseudogene	Chr4:138373560-138373904 (+)
129S1/SvImJ	ENSMUSG00200047037	pseudogene	Chr4:138705942-138706284 (-)
A/J	ENSMUSG00195035666	pseudogene	Chr4:140133699-140134042 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180046904	pseudogene	Chr4:137814400-137814743 (-)
C3H/HeJ	ENSMUSG00175041545	pseudogene	Chr4:141184051-141184395 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185051790	pseudogene	Chr4:140094778-140095122 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000009569	pseudogene	Chr4:144915575-144915919 (+)
JF1/MsJ	ENSUMUG00000050756	pseudogene	Chr4:141961716-141962060 (-)
JF1/MsJ	ENSUMUG00000009487	pseudogene	Chr4:144548128-144548472 (-)
JF1/MsJ	ENSUMUG00000050936	pseudogene	Chr4:142310705-142311048 (-)
JF1/MsJ	ENSUMUG00000009420	pseudogene	Chr4:144356991-144357335 (+)
JF1/MsJ	ENSUMUG00000009015	pseudogene	Chr4:142602414-142602757 (-)
JF1/MsJ	ENSUMUG00000050405	pseudogene	Chr4:140506770-140507114 (-)
LP/J	ENSMUSG00230018503	pseudogene	Chr4:143936218-143936562 (-)
LP/J	ENSMUSG00230018797	pseudogene	Chr4:146757335-146757678 (+)
LP/J	ENSMUSG00230018997	pseudogene	Chr4:148571010-148571354 (+)
LP/J	ENSMUSG00230018910	pseudogene	Chr4:147771377-147771721 (+)
LP/J	ENSMUSG00230018120	pseudogene	Chr4:143712127-143712471 (-)
LP/J	ENSMUSG00230018585	pseudogene	Chr4:144702390-144702733 (-)
LP/J	ENSMUSG00230018651	pseudogene	Chr4:145139849-145140192 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225011035	pseudogene	Chr4:152722703-152723047 (-)
NZO/HlLtJ	ENSMUSG00225010975	pseudogene	Chr4:150909698-150910042 (-)
NZO/HlLtJ	ENSMUSG00225010957	pseudogene	Chr4:150619213-150619556 (-)
NZO/HlLtJ	ENSMUSG00225011050	pseudogene	Chr4:153075646-153075990 (+)
NZO/HlLtJ	ENSMUSG00225010294	pseudogene	Chr4:149658382-149658726 (-)
NZO/HlLtJ	ENSMUSG00225011055	pseudogene	Chr4:153466030-153466374 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005048725	pseudogene	Chr4:137701398-137701742 (+)

Homology

• Gene Tree
  Gm13249
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  2 involving Gm13249
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000095517 (Evidence)
• NCBI Gene
  384081

Representative Sequences			Length	Strain/Species
genomic	384081	NCBI Gene Model | MGI Sequence Detail	345	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:291191 Wolf G, et al., KRAB-zinc finger protein gene expansion in response to active retrotransposons in the murine lineage. Elife. 2020 Jun 1;9:e56337
• Latest
  J:299274 Bertozzi TM, et al., KRAB zinc finger protein diversification drives mammalian interindividual methylation variability. Proc Natl Acad Sci U S A. 2020 Dec 8;117(49):31290-31300