Gm12891 Pseudogene Detail

Summary

• Symbol
  Gm12891
• Name
  predicted gene 12891

• Feature Type
  pseudogene
• IDs
  MGI:3649646
  NCBI Gene: 102632907
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:122819626-122819865 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 57.33 cM

Strain
Comparison

• SNPs within 2kb
  39 from dbSNP Build 142
• Strain Annotations
  7

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649646	pseudogene	Chr4:122819611-122819954 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0012850	pseudogene	Chr4:119463347-119463586 (+)
AKR/J	MGP_AKRJ_G0012820	pseudogene	Chr4:122686491-122686730 (+)
BALB/cJ	MGP_BALBcJ_G0012829	pseudogene	Chr4:120035553-120035760 (+)
C3H/HeJ	MGP_C3HHeJ_G0012687	pseudogene	Chr4:122811718-122811965 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0012740	pseudogene	Chr4:137353132-137353371 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011431	pseudogene	Chr15:75670009-75670248 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm12891
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12891
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11
• RefSeq
  1

• Ensembl
  ENSMUSG00000080929 (Evidence)
• NCBI Gene
  102632907

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080929	Ensembl Gene Model | MGI Sequence Detail	240	C57BL/6J
transcript	ENSMUST00000119358	Ensembl | MGI Sequence Detail	240	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;