Gm13021 Gene Detail

Summary

• Symbol
  Gm13021
• Name
  predicted gene 13021

• Feature Type
  lncRNA gene
• IDs
  MGI:3649637
  NCBI Gene: 102637389
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:140149864-140159242 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 71.58 cM

Strain
Comparison

• SNPs within 2kb
  483 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649637	lncRNA gene	Chr4:140149756-140159521 (+)
129S1/SvImJ	ENSMUSG00200046668	lncRNA gene	Chr4:133566139-133575546 (+)
A/J	ENSMUSG00195036821	lncRNA gene	Chr4:134909899-134919306 (+)
AKR/J	ENSMUSG00220048299	lncRNA gene	Chr4:133911160-133920664 (+)
BALB/cJ	ENSMUSG00180047434	lncRNA gene	Chr4:132551026-132560528 (+)
C3H/HeJ	ENSMUSG00175042881	lncRNA gene	Chr4:133577709-133587116 (+)
C57BL/6NJ	ENSMUSG00215050605	lncRNA gene	Chr4:135095399-135104809 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005957	lincRNA gene	Chr4:130101071-130108263 (+)
CAST/EiJ	ENSTCUG00005013690	lncRNA gene	Chr4:134534332-134543868 (+)
CBA/J	ENSMUSG00210029936	lncRNA gene	Chr4:133201691-133211098 (+)
DBA/2J	ENSMUSG00185051479	lncRNA gene	Chr4:134713228-134722730 (+)
FVB/NJ	ENSMUSG00205042083	lncRNA gene	Chr4:132968783-132978279 (+)
JF1/MsJ	ENSUMUG00000045691	lncRNA gene	Chr4:135403232-135412639 (+)
LP/J	ENSMUSG00230040836	lncRNA gene	Chr4:138504701-138514108 (+)
NOD/ShiLtJ	ENSMUSG00190036964	lncRNA gene	Chr4:132968619-132978026 (+)
NZO/HlLtJ	ENSMUSG00225010483	lncRNA gene	Chr4:144459407-144468814 (+)
PWK/PhJ	ENSLUMG00010046090	lncRNA gene	Chr4:132399764-132409267 (+)
SPRET/EiJ	ENSMSPG00010035322	lncRNA gene	Chr4:134457626-134467299 (+)
WSB/EiJ	ENSIUOG00005048300	lncRNA gene	Chr4:132855017-132864582 (+)

Homology

• Gene Tree
  Gm13021
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (other)
  2
• Gene trapped
  4
• Targeted
  1
• Genomic Mutations
  3 involving Gm13021
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  82
• RefSeq
  9

• Ensembl
  ENSMUSG00000086437 (Evidence)
• NCBI Gene
  102637389

Representative Sequences			Length	Strain/Species
genomic	102637389	NCBI Gene Model | MGI Sequence Detail	9379	C57BL/6J
transcript	KY468027	GenBank | ENA | DDBJ | MGI Sequence Detail	280	ZRU/MplStud

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm13021:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39968	Chr4:140153690-140153736 (+)	3,849 bp