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Trav6-5 Gene Detail
Summary
  • Symbol
    Trav6-5
  • Name
    T cell receptor alpha variable 6-5
Location &
Maps
more
  • Sequence Map
    Chr14:53728609-53729079 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.39 cM
Strain
Comparison
more
  • SNPs within 2kb
    23 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3649609
 gene segment Chr14:53728572-53729079 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002556
 gene segment Chr14:47415684-47416193 (+)
A/J MGP_AJ_G0002498
 gene segment Chr14:45634903-45635412 (+)
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0002472
 gene segment Chr14:47077668-47078136 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002630
 gene segment Chr14:49312649-49313154 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0002440
 gene segment Chr14:44095776-44096282 (+)
CBA/J MGP_CBAJ_G0002464
 gene segment Chr14:50441026-50441535 (+)
DBA/2J MGP_DBA2J_G0002472
 gene segment Chr14:45381038-45381544 (+)
FVB/NJ MGP_FVBNJ_G0002485
 gene segment Chr14:44951827-44952351 (+)
LP/J MGP_LPJ_G0002528
 gene segment Chr14:47500014-47500520 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002468
 gene segment Chr14:50231847-50232349 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002619
 gene segment Chr14:46620286-46620793 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0002359
 gene segment Chr14:43088094-43088596 (+)
WSB/EiJ MGP_WSBEiJ_G0002469
 gene segment Chr14:46920361-46920867 (+)



Homology
more
  • Human Ortholog
    TRAV9-1, T cell receptor alpha variable 9-1
  • Vertebrate Orthologs
    11
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV9-1, T cell receptor alpha variable 9-1
  • Synonyms
    TCRAV9S1, TRAV91
  • Links
    NCBI Gene ID: 28678
    UniProt: A0A075B6T8

  • Chr Location
    14q11.2; chr14:21811502-21811977 (+)  GRCh38
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 100126464 NCBI Gene Model | MGI Sequence Detail 471 C57BL/6J ±  kb
polypeptide A0A075B6B5 UniProt | EBI | MGI Sequence Detail 112 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less

  • Microarray probesets 2
References
more
  • Summaries
    All 8
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory