Sec61g-ps2 Pseudogene Detail

Summary

• Symbol
  Sec61g-ps2
• Name
  SEC61 translocon subunit gamma, pseudogene 2
• Synonyms
  Gm11575

• Feature Type
  pseudogene
• IDs
  MGI:3649592
  NCBI Gene: 102637269
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:60561998-60562225 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 30.48 cM

Strain
Comparison

• SNPs within 2kb
  27 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649592	pseudogene	Chr1:60561813-60562245 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010159	pseudogene	Chr1:60608553-60609259 (-)
A/J	MGP_AJ_G0010147	pseudogene	Chr1:58447391-58447623 (-)
AKR/J	MGP_AKRJ_G0010124	pseudogene	Chr1:60107044-60107280 (-)
BALB/cJ	MGP_BALBcJ_G0010132	pseudogene	Chr1:58478984-58479436 (-)
C3H/HeJ	MGP_C3HHeJ_G0010066	pseudogene	Chr1:60343734-60343983 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010384	pseudogene	Chr1:62957210-62959118 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0010035	pseudogene	Chr1:64944383-64944639 (-)
DBA/2J	MGP_DBA2J_G0010062	pseudogene	Chr1:57877857-57878084 (-)
FVB/NJ	MGP_FVBNJ_G0010085	pseudogene	Chr1:57169360-57169593 (-)
LP/J	MGP_LPJ_G0010147	pseudogene	Chr1:61475138-61475383 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010046	pseudogene	Chr1:67830266-67830493 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010361	pseudogene	Chr1:60007313-60007540 (-)
PWK/PhJ	MGP_PWKPhJ_G0013814	pseudogene	ChrX:68363721-68363948 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0009963	pseudogene	Chr1:59714078-59714305 (-)

Homology

• Human Ortholog
  SEC61G, SEC61 translocon subunit gamma

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  SEC61G, SEC61 translocon subunit gamma
  
• Synonyms
  SSS1
• Links
  HGNC:18277

  NCBI Gene ID: 23480

  neXtProt AC: NX_P60059

  UniProt: P60059

  
  
• Chr Location
  7p11.2; chr7:54752250-54759974 (-)  GRCh38

---

• MGI Vertebrate Homology
  Sec61g-ps2 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: SEC61G
• Gene Tree
  Sec61g-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Sec61g-ps2
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000081562 (Evidence)
• NCBI Gene
  102637269

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081562	Ensembl Gene Model | MGI Sequence Detail	228	C57BL/6J
transcript	ENSMUST00000122243	Ensembl | MGI Sequence Detail	228	Not Applicable

References

• Summaries
  All 10

  Gene Ontology 1

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45