Rpl38-ps1 Pseudogene Detail

Summary

• Symbol
  Rpl38-ps1
• Name
  ribosomal protein L38, pseudogene 1
• Synonyms
  Gm13020

• Feature Type
  pseudogene
• IDs
  MGI:3649580
  NCBI Gene: 625646
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:138153099-138153313 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 70.27 cM

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649580	pseudogene	Chr4:138153039-138153353 (+)
129S1/SvImJ	ENSMUSG00200021589	pseudogene	Chr4:131565825-131566039 (+)
A/J	ENSMUSG00195035213	pseudogene	Chr4:132908975-132909189 (+)
AKR/J	ENSMUSG00220048341	pseudogene	Chr4:131900796-131901010 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215050471	pseudogene	Chr4:133094689-133094903 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047797	pseudogene	Chr4:132523791-132524005 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205047877	pseudogene	Chr4:130959562-130959776 (+)
JF1/MsJ	ENSUMUG00000046499	pseudogene	Chr4:133416154-133416368 (+)
LP/J	ENSMUSG00230040928	pseudogene	Chr4:136503785-136503999 (+)
NOD/ShiLtJ	ENSMUSG00190049513	pseudogene	Chr4:130968119-130968333 (+)
NZO/HlLtJ	ENSMUSG00225027014	pseudogene	Chr4:142459197-142459411 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010038497	pseudogene	Chr4:132448262-132448415 (+)
WSB/EiJ	ENSIUOG00005044555	pseudogene	Chr4:130850514-130850728 (+)
WSB/EiJ	ENSIUOG00005035687	pseudogene	Chr10:67892965-67893179 (-)

Homology

• Gene Tree
  Rpl38-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Gene trapped
  1
• Genomic Mutations
  2 involving Rpl38-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000083326 (Evidence)
• NCBI Gene
  625646

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083326	Ensembl Gene Model | MGI Sequence Detail	215	C57BL/6J
transcript	ENSMUST00000117723	Ensembl | MGI Sequence Detail	215	Not Applicable

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Rpl38-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39852	Chr4:138153048-138153051 (+)	-49 bp