Gm13623 Pseudogene Detail

Summary

• Symbol
  Gm13623
• Name
  predicted gene 13623

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3649578
  NCBI Gene: 118568567
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:69596526-69597150 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 40.95 cM

Strain
Comparison

• SNPs within 2kb
  14 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649578	pseudogene	Chr2:69592615-69601252 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011687	pseudogene	Chr2:69752267-69752891 (+)
A/J	MGP_AJ_G0011682	pseudogene	Chr2:67066009-67066633 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0011663	pseudogene	Chr2:67227953-67228577 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0011958	pseudogene	Chr2:71869812-71870436 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010471	pseudogene	Chr2:64293070-64293699 (+)
CAST/EiJ	MGP_CASTEiJ_G0011339	pseudogene	Chr2:69225639-69226263 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0011579	pseudogene	Chr2:66080232-66080856 (+)
LP/J	MGP_LPJ_G0011643	pseudogene	Chr2:69606683-69607307 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011578	pseudogene	Chr2:76581792-76582416 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011950	pseudogene	Chr2:68973432-68974056 (+)
PWK/PhJ	MGP_PWKPhJ_G0011196	pseudogene	Chr2:66539982-66540719 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011016	pseudogene	Chr2:69195533-69196694 (+)
WSB/EiJ	MGP_WSBEiJ_G0011365	pseudogene	Chr2:69395508-69396132 (+)

Homology

• Gene Tree
  Gm13623
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13623
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  2

• Ensembl
  ENSMUSG00000083007 (Evidence)
• NCBI Gene
  118568567

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083007	Ensembl Gene Model | MGI Sequence Detail	625	C57BL/6J
transcript	ENSMUST00000118359	Ensembl | MGI Sequence Detail	625	Not Applicable
polypeptide	XP_036018681	RefSeq | MGI Sequence Detail	203	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm13623:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr514	Chr2:69596484-69596489 (+)	-39 bp