Trav7-3 Gene Detail

Summary

• Symbol
  Trav7-3
• Name
  T cell receptor alpha variable 7-3
• Synonyms
  Gm13946

• Feature Type
  gene segment
• IDs
  MGI:3649556
  NCBI Gene: 547420
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:53680771-53681296 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.37 cM

Strain
Comparison

• SNPs within 2kb
  2 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649556	gene segment	Chr14:53680706-53681296 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0002496	gene segment	Chr14:45597123-45597714 (+)
AKR/J	MGP_AKRJ_G0002486	gene segment	Chr14:47250469-47251060 (+)
BALB/cJ	MGP_BALBcJ_G0002493	gene segment	Chr14:45688278-45688869 (+)
C3H/HeJ	MGP_C3HHeJ_G0002468	gene segment	Chr14:46984958-46985549 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0002431	gene segment	Chr14:43931475-43932066 (+)
CBA/J	MGP_CBAJ_G0002460	gene segment	Chr14:50358696-50359287 (+)
DBA/2J	MGP_DBA2J_G0002469	gene segment	Chr14:45333598-45334189 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0002524	gene segment	Chr14:47439683-47440274 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002481	gene segment	Chr14:50585611-50599767 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002616	gene segment	Chr14:46575683-46576274 (+)
PWK/PhJ	MGP_PWKPhJ_G0002413	gene segment	Chr14:42105046-42105637 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0002463	gene segment	Chr14:46875553-46876144 (+)

Homology

• Human Ortholog
  TRAV12-3, T cell receptor alpha variable 12-3

• Vertebrate Orthologs
  8

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRAV12-3, T cell receptor alpha variable 12-3
  
• Synonyms
  TCRAV12S3, TCRAV2S2, TRAV123
• Links
  HGNC:12107

  NCBI Gene ID: 28672

  UniProt: A0A0B4J271

  
  
• Chr Location
  14q11.2; chr14:21965451-21966061 (+)  GRCh38

---

• MGI Vertebrate Homology
  Trav7-3 stringent orthology
  1 human;1 mouse;1 rat;6 zebrafish
  
• HCOP
  vertebrate homology predictions: TRAV12-3
• Gene Tree
  Trav7-3
  

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000096908 (Evidence)
• NCBI Gene
  547420

Representative Sequences			Length	Strain/Species
genomic	547420	NCBI Gene Model | MGI Sequence Detail	526	C57BL/6J
polypeptide	Q5R1I1	UniProt | EBI | MGI Sequence Detail	112	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR013106 Immunoglobulin V-set domain

References

• Summaries
  All 9

  Gene Ontology 1
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Trav7-3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125480	Chr14:53680700-53680719 (+)	-61 bp