Gm13675 Pseudogene Detail

Summary

• Symbol
  Gm13675
• Name
  predicted gene 13675

• Feature Type
  pseudogene
• IDs
  MGI:3649532
  NCBI Gene: 433550
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:82337560-82338088 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 49.08 cM

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649532	pseudogene	Chr2:82337467-82338219 (+)
129S1/SvImJ	ENSMUSG00200004611	pseudogene	Chr2:79391573-79392101 (+)
A/J	ENSMUSG00195020357	pseudogene	Chr2:79551561-79552089 (+)
AKR/J	ENSMUSG00220002508	pseudogene	Chr2:79437208-79437736 (+)
BALB/cJ	ENSMUSG00180006990	pseudogene	Chr2:79479500-79480028 (+)
C3H/HeJ	ENSMUSG00175011489	pseudogene	Chr2:79607150-79607678 (+)
C57BL/6NJ	ENSMUSG00215028786	pseudogene	Chr2:79460556-79461084 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009458	pseudogene	Chr10:111721697-111722218 (+)
CAST/EiJ	ENSTCUG00005032594	pseudogene	Chr2:78927258-78927786 (+)
CBA/J	ENSMUSG00210002538	pseudogene	Chr2:79641255-79641783 (+)
DBA/2J	ENSMUSG00185011881	pseudogene	Chr2:79475838-79476366 (+)
FVB/NJ	ENSMUSG00205021080	pseudogene	Chr2:78801703-78802231 (+)
JF1/MsJ	ENSUMUG00000045467	pseudogene	Chr2:79150359-79150887 (+)
LP/J	ENSMUSG00230026518	pseudogene	Chr2:81220380-81220908 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225003413	pseudogene	Chr2:89052047-89052575 (+)
PWK/PhJ	ENSLUMG00010035198	pseudogene	Chr2:79321318-79321846 (+)
SPRET/EiJ	ENSMSPG00010022104	pseudogene	Chr2:80687338-80687866 (+)
WSB/EiJ	ENSIUOG00005011869	pseudogene	Chr2:76406536-76407064 (-)

Homology

• Gene Tree
  Gm13675
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm13675
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000080979 (Evidence)
• NCBI Gene
  433550

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080979	Ensembl Gene Model | MGI Sequence Detail	529	C57BL/6J
transcript	ENSMUST00000120616	Ensembl | MGI Sequence Detail	529	Not Applicable

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Gm13675:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18636	Chr2:82337456-82337471 (+)	-96 bp
Tssr18637	Chr2:82337993-82338010 (+)	442 bp