Gm12442 Pseudogene Detail

Summary

• Symbol
  Gm12442
• Name
  predicted gene 12442

• Feature Type
  pseudogene
• IDs
  MGI:3649531
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:48972978-48973315 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 26.27 cM

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649531	pseudogene	Chr4:48972978-48973315 (+)
129S1/SvImJ	ENSMUSG00200003693	pseudogene	Chr4:45057686-45058023 (+)
A/J	ENSMUSG00195006662	pseudogene	Chr4:45468309-45468646 (+)
AKR/J	ENSMUSG00220003156	pseudogene	Chr4:45195343-45195680 (+)
BALB/cJ	ENSMUSG00180031673	pseudogene	Chr4:45054969-45055306 (+)
C3H/HeJ	ENSMUSG00175021783	pseudogene	Chr4:45204169-45204506 (+)
C57BL/6NJ	ENSMUSG00215028292	pseudogene	Chr4:45001935-45002272 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011252	pseudogene	Chr4:42980072-42980410 (+)
CAST/EiJ	ENSTCUG00005039418	pseudogene	Chr4:45267199-45267536 (+)
CBA/J	ENSMUSG00210019738	pseudogene	Chr4:44903794-44904131 (+)
DBA/2J	ENSMUSG00185034528	pseudogene	Chr4:45267319-45267656 (+)
FVB/NJ	ENSMUSG00205024108	pseudogene	Chr4:44562910-44563247 (+)
JF1/MsJ	ENSUMUG00000039882	pseudogene	Chr4:45515378-45515715 (+)
LP/J	ENSMUSG00230043381	pseudogene	Chr4:48852709-48853046 (+)
NOD/ShiLtJ	ENSMUSG00190027672	pseudogene	Chr4:45157982-45158319 (+)
NZO/HlLtJ	ENSMUSG00225003455	pseudogene	Chr4:53437086-53437423 (+)
PWK/PhJ	ENSLUMG00010013313	pseudogene	Chr4:44522186-44522523 (+)
SPRET/EiJ	ENSMSPG00010010197	pseudogene	Chr4:45483579-45483917 (+)
WSB/EiJ	ENSIUOG00005004581	pseudogene	Chr4:44905438-44905775 (+)

Homology

• Gene Tree
  Gm12442
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Transgenic
  2
• Genomic Mutations
  2 involving Gm12442
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000083869 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083869	Ensembl Gene Model | MGI Sequence Detail	338	C57BL/6J
transcript	ENSMUST00000118372	Ensembl | MGI Sequence Detail	338	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:257167 Kaneko R, et al., Inhibitory neuron-specific Cre-dependent red fluorescent labeling using VGAT BAC-based transgenic mouse lines with identified transgene integration sites. J Comp Neurol. 2018 Feb 15;526(3):373-396