Gm13651 Pseudogene Detail

Summary

• Symbol
  Gm13651
• Name
  predicted gene 13651

• Feature Type
  pseudogene
• IDs
  MGI:3649524
  NCBI Gene: 623706
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:77121675-77122784 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 45.94 cM

Strain
Comparison

• SNPs within 2kb
  85 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649524	pseudogene	Chr2:77121371-77123274 (+)
129S1/SvImJ	ENSMUSG00200004512	pseudogene	Chr2:74159086-74160195 (+)
A/J	ENSMUSG00195021565	pseudogene	Chr2:74314878-74315987 (+)
AKR/J	ENSMUSG00220002613	pseudogene	Chr2:74276563-74277672 (+)
BALB/cJ	ENSMUSG00180007465	pseudogene	Chr2:74268491-74269600 (+)
C3H/HeJ	ENSMUSG00175012016	pseudogene	Chr2:74391629-74392738 (+)
C57BL/6NJ	ENSMUSG00215031427	pseudogene	Chr2:74234583-74235692 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210002641	pseudogene	Chr2:74431007-74432116 (+)
DBA/2J	ENSMUSG00185011924	pseudogene	Chr2:74266824-74267933 (+)
FVB/NJ	ENSMUSG00205021188	pseudogene	Chr2:73721888-73722997 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230027111	pseudogene	Chr2:76072859-76073968 (+)
NOD/ShiLtJ	ENSMUSG00190011057	pseudogene	Chr2:74335139-74336248 (+)
NZO/HlLtJ	ENSMUSG00225003817	pseudogene	Chr2:83830908-83832017 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005011610	pseudogene	Chr2:74402594-74403703 (+)

Homology

• Gene Tree
  Gm13651
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm13651
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000081611 (Evidence)
• NCBI Gene
  623706

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081611	Ensembl Gene Model | MGI Sequence Detail	1110	C57BL/6J
transcript	ENSMUST00000119086	Ensembl | MGI Sequence Detail	1110	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Gm13651:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18509	Chr2:77121367-77121372 (+)	-305 bp