Gm12222 Pseudogene Detail

Summary

• Symbol
  Gm12222
• Name
  predicted gene 12222

• Feature Type
  pseudogene
• IDs
  MGI:3649523
  NCBI Gene: 260348
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:54090259-54090518 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 32.13 cM

Strain
Comparison

• SNPs within 2kb
  95 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649523	pseudogene	Chr11:54090191-54090684 (+)
129S1/SvImJ	ENSMUSG00200040919	pseudogene	Chr11:51086325-51086584 (+)
A/J	ENSMUSG00195038355	pseudogene	Chr11:51023636-51023895 (+)
AKR/J	ENSMUSG00220040959	pseudogene	Chr11:51212573-51212832 (+)
BALB/cJ	ENSMUSG00180037956	pseudogene	Chr11:51088769-51089028 (+)
C3H/HeJ	ENSMUSG00175039347	pseudogene	Chr11:51054880-51055139 (+)
C57BL/6NJ	ENSMUSG00215037371	pseudogene	Chr11:50877733-50877992 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009592	pseudogene	Chr11:49124935-49125191 (+)
CAST/EiJ	ENSTCUG00005044737	pseudogene	Chr11:50651105-50651364 (+)
CBA/J	ENSMUSG00210030879	pseudogene	Chr11:50910763-50911022 (+)
DBA/2J	ENSMUSG00185029232	pseudogene	Chr11:51124097-51124356 (+)
FVB/NJ	ENSMUSG00205040909	pseudogene	Chr11:50953211-50953470 (+)
JF1/MsJ	ENSUMUG00000050809	pseudogene	Chr11:51500910-51501169 (+)
LP/J	ENSMUSG00230050239	pseudogene	Chr11:52303931-52304190 (+)
NOD/ShiLtJ	ENSMUSG00190043453	pseudogene	Chr11:51174796-51175055 (+)
NZO/HlLtJ	ENSMUSG00225032928	pseudogene	Chr11:54353573-54353832 (+)
PWK/PhJ	ENSLUMG00010036665	pseudogene	Chr11:50949571-50949830 (+)
SPRET/EiJ	ENSMSPG00010021026	pseudogene	Chr11:51634957-51635216 (+)
WSB/EiJ	ENSIUOG00005041162	pseudogene	Chr11:50961664-50961923 (+)

Homology

• Gene Tree
  Gm12222
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm12222
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000060068 (Evidence)
• NCBI Gene
  260348

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000060068	Ensembl Gene Model | MGI Sequence Detail	260	C57BL/6J
transcript	ENSMUST00000121368	Ensembl | MGI Sequence Detail	260	Not Applicable

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:60187 Zhu Y, et al., Genomic interval engineering of mice identifies a novel modulator of triglyceride production. Proc Natl Acad Sci U S A. 2000 Feb 1;97(3):1137-42

TSS for Gm12222:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101476	Chr11:54090184-54090192 (+)	-71 bp