Gm13649 Pseudogene Detail

Summary

• Symbol
  Gm13649
• Name
  predicted gene 13649

• Feature Type
  pseudogene
• IDs
  MGI:3649521
  NCBI Gene: 667906
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:77165703-77166308 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 45.94 cM

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649521	pseudogene	Chr2:77165649-77166349 (+)
129S1/SvImJ	ENSMUSG00200004912	pseudogene	Chr2:74203907-74204512 (+)
A/J	ENSMUSG00195020581	pseudogene	Chr2:74358922-74359527 (+)
AKR/J	ENSMUSG00220002687	pseudogene	Chr2:74321380-74321985 (+)
BALB/cJ	ENSMUSG00180007286	pseudogene	Chr2:74312539-74313144 (+)
C3H/HeJ	ENSMUSG00175011570	pseudogene	Chr2:74435663-74436268 (+)
C57BL/6NJ	ENSMUSG00215026000	pseudogene	Chr2:74278622-74279227 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010490	pseudogene	Chr2:72143477-72144094 (+)
CAST/EiJ	ENSTCUG00005032764	pseudogene	Chr2:73754333-73754938 (+)
CBA/J	ENSMUSG00210002553	pseudogene	Chr2:74475036-74475641 (+)
DBA/2J	ENSMUSG00185011935	pseudogene	Chr2:74310850-74311455 (+)
FVB/NJ	ENSMUSG00205021378	pseudogene	Chr2:73766710-73767315 (+)
JF1/MsJ	ENSUMUG00000046020	pseudogene	Chr2:73998923-73999528 (+)
LP/J	ENSMUSG00230026697	pseudogene	Chr2:76116888-76117493 (+)
NOD/ShiLtJ	ENSMUSG00190011500	pseudogene	Chr2:74379125-74379730 (+)
NZO/HlLtJ	ENSMUSG00225003578	pseudogene	Chr2:83874921-83875526 (+)
PWK/PhJ	ENSLUMG00010033503	pseudogene	Chr2:74227886-74228491 (+)
SPRET/EiJ	ENSMSPG00010022382	pseudogene	Chr2:75633349-75633954 (+)
WSB/EiJ	ENSIUOG00005011756	pseudogene	Chr2:74447272-74447877 (+)

Homology

• Gene Tree
  Gm13649
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm13649
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000082006 (Evidence)
• NCBI Gene
  667906

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082006	Ensembl Gene Model | MGI Sequence Detail	606	C57BL/6J
transcript	ENSMUST00000122325	Ensembl | MGI Sequence Detail	606	Not Applicable

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Gm13649:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr544	Chr2:77165413-77165414 (+)	-289 bp