Gm14138 Pseudogene Detail

Summary

• Symbol
  Gm14138
• Name
  predicted gene 14138

• Feature Type
  pseudogene
• IDs
  MGI:3649496
  NCBI Gene: 545640
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:119017998-119018742 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 59.97 cM

Strain
Comparison

• SNPs within 2kb
  151 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649496	pseudogene	Chr2:119017975-119018780 (+)
129S1/SvImJ	ENSMUSG00200049098	pseudogene	Chr2:115957251-115958000 (+)
A/J	ENSMUSG00195025318	pseudogene	Chr2:116005947-116006696 (+)
AKR/J	ENSMUSG00220044128	pseudogene	Chr2:115883487-115884236 (+)
BALB/cJ	ENSMUSG00180044261	pseudogene	Chr2:115811040-115811789 (+)
C3H/HeJ	ENSMUSG00175027454	pseudogene	Chr2:116272660-116273409 (+)
C57BL/6NJ	ENSMUSG00215030103	pseudogene	Chr2:115934814-115935558 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009985	pseudogene	Chr14:89962738-89963480 (-)
CAST/EiJ	ENSTCUG00005017175	pseudogene	Chr2:115209041-115209790 (+)
CBA/J	ENSMUSG00210007527	pseudogene	Chr2:116113632-116114381 (+)
DBA/2J	ENSMUSG00185048036	pseudogene	Chr2:115807739-115808488 (+)
FVB/NJ	ENSMUSG00205044631	pseudogene	Chr2:115021823-115022572 (+)
JF1/MsJ	ENSUMUG00000041858	pseudogene	Chr2:115676289-115677033 (+)
LP/J	ENSMUSG00230023793	pseudogene	Chr2:117616906-117617655 (+)
NOD/ShiLtJ	ENSMUSG00190046239	pseudogene	Chr2:116041928-116042677 (+)
NZO/HlLtJ	ENSMUSG00225004738	pseudogene	Chr2:125520285-125521034 (+)
PWK/PhJ	ENSLUMG00010047999	pseudogene	Chr2:115582285-115583029 (+)
SPRET/EiJ	ENSMSPG00010044252	pseudogene	Chr2:117986452-117987197 (+)
WSB/EiJ	ENSIUOG00005028702	pseudogene	Chr2:115773304-115774053 (+)

Homology

• Gene Tree
  Gm14138
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm14138
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000081572 (Evidence)
• NCBI Gene
  545640

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081572	Ensembl Gene Model | MGI Sequence Detail	745	C57BL/6J
transcript	ENSMUST00000122061	Ensembl | MGI Sequence Detail	745	Not Applicable

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm14138:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr616	Chr2:119016716-119016721 (+)	-1,279 bp