Nr6a1os Gene Detail

Summary

• Symbol
  Nr6a1os
• Name
  nuclear receptor subfamily 6, group A, member 1, opposite strand
• Synonyms
  Gm13507, Gm36800

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3649430
  NCBI Gene: 102640822
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:38713259-38764002 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 24.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  897 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649430	antisense lncRNA gene	Chr2:38713259-38811857 (+)
129S1/SvImJ	ENSMUSG00200049099	lncRNA gene	Chr2:35693527-35722638 (+)
A/J	ENSMUSG00195041677	lncRNA gene	Chr2:35805127-35834258 (+)
AKR/J	ENSMUSG00220045468	lncRNA gene	Chr2:35927603-35956724 (+)
BALB/cJ	ENSMUSG00180049227	lncRNA gene	Chr2:35816832-35845945 (+)
C3H/HeJ	ENSMUSG00175046821	lncRNA gene	Chr2:35803572-35832686 (+)
C57BL/6NJ	ENSMUSG00215047185	lncRNA gene	Chr2:35857994-35887108 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003175	antisense lncRNA gene	Chr2:34692532-34720456 (+)
CAST/EiJ	ENSTCUG00005017795	lncRNA gene	Chr2:35524843-35554665 (+)
CBA/J	ENSMUSG00210050268	lncRNA gene	Chr2:35857968-35887079 (+)
DBA/2J	ENSMUSG00185048343	lncRNA gene	Chr2:35717738-35746852 (+)
FVB/NJ	ENSMUSG00205037263	lncRNA gene	Chr2:35522808-35551899 (+)
JF1/MsJ	ENSUMUG00000015477	lncRNA gene	Chr2:35602972-35631778 (+)
LP/J	ENSMUSG00230047875	lncRNA gene	Chr2:37637943-37667048 (+)
NOD/ShiLtJ	ENSMUSG00190043762	lncRNA gene	Chr2:35718897-35748010 (+)
NZO/HlLtJ	ENSMUSG00225050338	lncRNA gene	Chr2:45401537-45430650 (+)
PWK/PhJ	ENSLUMG00010045284	lncRNA gene	Chr2:35739743-35768548 (+)
SPRET/EiJ	ENSMSPG00010043436	lncRNA gene	Chr2:36406250-36436014 (+)
WSB/EiJ	ENSIUOG00005043162	lncRNA gene	Chr2:35713830-35742944 (+)

Homology

• Gene Tree
  Nr6a1os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  14
• Gene trapped
  13
• Transgenic
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  51
• RefSeq
  25

• Ensembl
  ENSMUSG00000085201 (Evidence)
• NCBI Gene
  102640822

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085201	Ensembl Gene Model | MGI Sequence Detail	50744	C57BL/6J
transcript	ENSMUST00000306962	Ensembl | MGI Sequence Detail	1624	Not Applicable

Other
Accession IDs

MGI:5595959

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:346152 Takahashi F, et al., Development of sexual dimorphism of skeletal muscles through the adrenal cortex, caused by androgen-induced global gene suppression. Cell Rep. 2024 Feb 27;43(2):113715

TSS for Nr6a1os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17564	Chr2:38713241-38713284 (+)	4 bp
Tssr17565	Chr2:38713349-38713362 (+)	97 bp