Trav11d Gene Detail

Summary

• Symbol
  Trav11d
• Name
  T cell receptor alpha variable 11D

• Feature Type
  gene segment
• IDs
  MGI:3649423
  NCBI Gene: 640196
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:53061814-53062369 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.11 cM

Strain
Comparison

• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649423	gene segment	Chr14:53061814-53062370 (+)
129S1/SvImJ	ENSMUSG00200043892	gene segment	Chr14:42290477-42291028 (+)
A/J	ENSMUSG00195026764	gene segment	Chr14:42088673-42089224 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180053687	gene segment	Chr14:42134477-42135028 (+)
C3H/HeJ	ENSMUSG00175052587	gene segment	Chr14:43816947-43817498 (+)
C57BL/6NJ	ENSMUSG00215048858	gene segment	Chr14:42079296-42079851 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210047888	gene segment	Chr14:42066895-42067446 (+)
DBA/2J	ENSMUSG00185056030	gene segment	Chr14:47288164-47288719 (+)
FVB/NJ	ENSMUSG00205049652	gene segment	Chr14:41405376-41405927 (+)
JF1/MsJ	ENSUMUG00000050906	gene segment	Chr14:58847002-58847553 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190051718	gene segment	Chr14:41752786-41753337 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010051726	gene segment	Chr14:41703178-41703729 (+)
SPRET/EiJ	ENSMSPG00010049017	gene segment	Chr14:44984172-44984727 (+)
WSB/EiJ	no annotation

Homology

• Human Ortholog
  TRAV10, T cell receptor alpha variable 10

• Vertebrate Orthologs
  18

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRAV10, T cell receptor alpha variable 10
  
• Synonyms
  TCRAV10S1, TCRAV24S1
• Links
  HGNC:12103

  NCBI Gene ID: 28676

  UniProt: A0A0B4J240

  
  
• Chr Location
  14q11.2; chr14:21825472-21826075 (+)  GRCh38

---

• MGI Vertebrate Homology
  Trav11d stringent orthology
  1 human;1 mouse;17 zebrafish
  
• HCOP
  vertebrate homology predictions: TRAV10
• Gene Tree
  Trav11d
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000095088 (Evidence)
• NCBI Gene
  640196

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000095088	Ensembl Gene Model | MGI Sequence Detail	556	C57BL/6J
transcript	ENSMUST00000103648	Ensembl | MGI Sequence Detail	342	Not Applicable
polypeptide	ENSMUSP00000100425	Ensembl | MGI Sequence Detail	114	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• PDB
  4Y16, 4Y2D, 4Y4F, 4Y4H, 4Y4K, 4ZAK, 5VCJ, 6MIV, 6MIY, 6MJ4, 6MJ6, 6MJA, 6MJI, 6MJJ, 6MJQ, 8T4Z
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR013106 Immunoglobulin V-set domain
  IPR051896 T cell receptor alpha variable region

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 9
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61