Trav6d-5 Gene Detail

Summary

• Symbol
  Trav6d-5
• Name
  T cell receptor alpha variable 6D-5

• Feature Type
  gene segment
• IDs
  MGI:3649416
  NCBI Gene: 667481
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:53032622-53033090 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.09 cM

Strain
Comparison

• SNPs within 2kb
  65 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649416	gene segment	Chr14:53032622-53033090 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002557	gene segment	Chr14:47415721-47416193 (+)
A/J	MGP_AJ_G0002515	gene segment	Chr14:45955490-45955962 (+)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0002478	gene segment	Chr14:47397715-47398146 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002632	gene segment	Chr14:49312686-49313154 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0002441	gene segment	Chr14:44095813-44096282 (+)
CBA/J	MGP_CBAJ_G0002473	gene segment	Chr14:50764594-50765066 (+)
DBA/2J	MGP_DBA2J_G0002474	gene segment	Chr14:45381075-45381544 (+)
FVB/NJ	MGP_FVBNJ_G0002493	gene segment	Chr14:45276949-45277436 (+)
LP/J	MGP_LPJ_G0002539	gene segment	Chr14:47846473-47846942 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002457	gene segment	Chr14:49898797-49899262 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002643	gene segment	Chr14:46926983-46927453 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0002360	gene segment	Chr14:43088131-43088596 (+)
WSB/EiJ	MGP_WSBEiJ_G0002471	gene segment	Chr14:46920398-46920867 (+)

Homology

• Human Ortholog
  TRAV9-1, T cell receptor alpha variable 9-1

• Vertebrate Orthologs
  11

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRAV9-1, T cell receptor alpha variable 9-1
  
• Synonyms
  TCRAV9S1, TRAV91
• Links
  HGNC:12153

  NCBI Gene ID: 28678

  UniProt: A0A075B6T8

  
  
• Chr Location
  14q11.2; chr14:21811502-21811977 (+)  GRCh38

---

• MGI Vertebrate Homology
  Trav6d-5 stringent orthology
  1 human;1 mouse;10 zebrafish
  
• HCOP
  vertebrate homology predictions: TRAV9-1
• Gene Tree
  Trav6d-5
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000095426 (Evidence)
• NCBI Gene
  667481

Representative Sequences			Length	Strain/Species
genomic	667481	NCBI Gene Model | MGI Sequence Detail	469	C57BL/6J
transcript	X02969	GenBank | ENA | DDBJ | MGI Sequence Detail	433	Not Specified
polypeptide	A0A075B6B9	UniProt | EBI | MGI Sequence Detail	112	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR013106 Immunoglobulin V-set domain

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8
• Earliest
  J:8041 Becker DM, et al., Variability and repertoire size of T-cell receptor V alpha gene segments. Nature. 1985 Oct 3-9;317(6036):430-4
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Trav6d-5:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125472	Chr14:53032540-53032551 (+)	-76 bp
Tssr125473	Chr14:53032576-53032583 (+)	-42 bp