Gm12474 Gene Detail

Summary

• Symbol
  Gm12474
• Name
  predicted gene 12474

• Feature Type
  lncRNA gene
• IDs
  MGI:3649378
  NCBI Gene: 545557
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:100396724-100431236 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 43.71 cM

Strain
Comparison

• SNPs within 2kb
  1027 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649378	lncRNA gene	Chr3:100396724-100438524 (+)
129S1/SvImJ	ENSMUSG00200046611	lncRNA gene	Chr3:97001080-97035515 (+)
A/J	ENSMUSG00195048857	lncRNA gene	Chr3:97394902-97429337 (+)
AKR/J	ENSMUSG00220041507	lncRNA gene	Chr3:95755042-95789481 (+)
BALB/cJ	ENSMUSG00180041052	lncRNA gene	Chr3:97334532-97368971 (+)
C3H/HeJ	ENSMUSG00175033459	lncRNA gene	Chr3:96880821-96915258 (+)
C57BL/6NJ	ENSMUSG00215039564	lncRNA gene	Chr3:97658481-97692914 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005687	lincRNA gene	Chr3:94610214-94644848 (+)
CAST/EiJ	ENSTCUG00005020973	lncRNA gene	Chr3:97604693-97639451 (+)
CBA/J	ENSMUSG00210051888	lncRNA gene	Chr3:97503039-97537474 (+)
DBA/2J	ENSMUSG00185045892	lncRNA gene	Chr3:97981890-98016363 (+)
FVB/NJ	ENSMUSG00205028443	lncRNA gene	Chr3:96578046-96612479 (+)
JF1/MsJ	ENSUMUG00000048816	lncRNA gene	Chr3:96706152-96741048 (+)
LP/J	ENSMUSG00230047027	lncRNA gene	Chr3:99929786-99964221 (+)
NOD/ShiLtJ	ENSMUSG00190049959	lncRNA gene	Chr3:98181330-98215799 (+)
NZO/HlLtJ	ENSMUSG00225021431	lncRNA gene	Chr3:102362529-102396964 (+)
PWK/PhJ	ENSLUMG00010031439	lncRNA gene	Chr3:96790203-96829921 (+)
SPRET/EiJ	ENSMSPG00010047970	lncRNA gene	Chr3:97050271-97085611 (+)
WSB/EiJ	ENSIUOG00005031290	lncRNA gene	Chr3:97522462-97556930 (+)

Homology

• Gene Tree
  Gm12474
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm12474
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  45
• RefSeq
  9
• UniProt
  1

• Ensembl
  ENSMUSG00000053957 (Evidence)
• NCBI Gene
  545557

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000053957	Ensembl Gene Model | MGI Sequence Detail	34513	C57BL/6J
transcript	ENSMUST00000199168	Ensembl | MGI Sequence Detail	2697	Not Applicable
polypeptide	Q8BPS1	UniProt | EBI | MGI Sequence Detail	155	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 15

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm12474:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30878	Chr3:100396779-100396812 (+)	72 bp
Tssr30879	Chr3:100396824-100396876 (+)	126 bp