Gm12059 Gene Detail

Summary

• Symbol
  Gm12059
• Name
  predicted gene 12059

• Feature Type
  lncRNA gene
• IDs
  MGI:3649372
  NCBI Gene: 100042875
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:23017881-23025574 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 14.26 cM

Strain
Comparison

• SNPs within 2kb
  333 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649372	lncRNA gene	Chr11:23015064-23026310 (+)
129S1/SvImJ	ENSMUSG00200022288	lncRNA gene	Chr11:20035342-20042918 (+)
A/J	ENSMUSG00195005594	lncRNA gene	Chr11:19882717-19890293 (+)
AKR/J	ENSMUSG00220003705	lncRNA gene	Chr11:19972026-19979602 (+)
BALB/cJ	ENSMUSG00180004263	lncRNA gene	Chr11:19877277-19884567 (+)
C3H/HeJ	ENSMUSG00175008250	lncRNA gene	Chr11:19897782-19905289 (+)
C57BL/6NJ	ENSMUSG00215003444	lncRNA gene	Chr11:19961904-19969484 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013298	unclassified non-coding RNA gene	Chr11:18893297-18900329 (+)
CAST/EiJ	ENSTCUG00005007674	lncRNA gene	Chr11:19863776-19870992 (+)
CBA/J	ENSMUSG00210009526	lncRNA gene	Chr11:19882043-19889412 (+)
DBA/2J	ENSMUSG00185012156	lncRNA gene	Chr11:19989278-19996785 (+)
FVB/NJ	ENSMUSG00205005203	lncRNA gene	Chr11:19933638-19941214 (+)
JF1/MsJ	ENSUMUG00000010925	lncRNA gene	Chr11:20200994-20208475 (+)
LP/J	ENSMUSG00230015811	lncRNA gene	Chr11:21027304-21034593 (+)
NOD/ShiLtJ	ENSMUSG00190008939	lncRNA gene	Chr11:20042967-20050405 (+)
NZO/HlLtJ	ENSMUSG00225022349	lncRNA gene	Chr11:23067162-23074738 (+)
PWK/PhJ	ENSLUMG00010012194	lncRNA gene	Chr11:19873125-19881280 (+)
SPRET/EiJ	ENSMSPG00010019470	lncRNA gene	Chr11:20122474-20127039 (+)
WSB/EiJ	ENSIUOG00005010186	lncRNA gene	Chr11:19943809-19951118 (+)

Homology

• Gene Tree
  Gm12059
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12059
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2

• Ensembl
  ENSMUSG00000085665 (Evidence)
• NCBI Gene
  100042875

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085665	Ensembl Gene Model | MGI Sequence Detail	7694	C57BL/6J
transcript	ENSMUST00000128996	Ensembl | MGI Sequence Detail	3222	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm12059:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100606	Chr11:23017992-23018005 (+)	118 bp