Gm14396 Gene Detail

Summary

• Symbol
  Gm14396
• Name
  predicted gene 14396

• Feature Type
  lncRNA gene
• IDs
  MGI:3649369
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:74525609-74527727 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 44.13 cM

Strain
Comparison

• SNPs within 2kb
  52 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649369	lncRNA gene	Chr2:74525609-74527727 (+)
129S1/SvImJ	ENSMUSG00200004100	lncRNA gene	Chr2:71574494-71576337 (+)
A/J	ENSMUSG00195019760	lncRNA gene	Chr2:71721194-71723039 (+)
AKR/J	ENSMUSG00220002347	lncRNA gene	Chr2:71685833-71687674 (+)
BALB/cJ	ENSMUSG00180007071	lncRNA gene	Chr2:71674853-71676694 (+)
C3H/HeJ	ENSMUSG00175011192	lncRNA gene	Chr2:71800756-71802599 (+)
C57BL/6NJ	ENSMUSG00215031214	lncRNA gene	Chr2:71637697-71639542 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005406	lincRNA gene	Chr2:69500044-69501905 (+)
CAST/EiJ	ENSTCUG00005031314	lncRNA gene	Chr2:71114590-71116443 (+)
CBA/J	ENSMUSG00210002414	lncRNA gene	Chr2:71843406-71845255 (+)
DBA/2J	ENSMUSG00185011861	lncRNA gene	Chr2:71679253-71681100 (+)
FVB/NJ	ENSMUSG00205020826	lncRNA gene	Chr2:71131229-71133070 (+)
JF1/MsJ	ENSUMUG00000044043	lncRNA gene	Chr2:71356390-71358272 (+)
LP/J	ENSMUSG00230026251	lncRNA gene	Chr2:73474084-73475925 (+)
NOD/ShiLtJ	ENSMUSG00190010870	lncRNA gene	Chr2:71753959-71755800 (+)
NZO/HlLtJ	ENSMUSG00225015303	lncRNA gene	Chr2:81238151-81239996 (+)
PWK/PhJ	ENSLUMG00010032617	lncRNA gene	Chr2:71594730-71596597 (+)
SPRET/EiJ	ENSMSPG00010022311	lncRNA gene	Chr2:72994701-72996561 (+)
WSB/EiJ	ENSIUOG00005011410	lncRNA gene	Chr2:71797240-71799081 (+)

Homology

• Gene Tree
  Gm14396
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  39 phenotype references
  

• All Mutations and Alleles
  22
• Chemically induced (other)
  1
• Spontaneous
  1
• Targeted
  20
• Genomic Mutations
  22 involving Gm14396
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000086077 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086077	Ensembl Gene Model | MGI Sequence Detail	2119	C57BL/6J
transcript	ENSMUST00000293874	Ensembl | MGI Sequence Detail	723	Not Applicable

References

• Summaries
  All 43

  Phenotypes 39
• Earliest
  J:92363 Zakany J, et al., Hox genes and the making of sphincters. Nature. 1999 Oct 21;401(6755):761-2
• Latest
  J:373797 Hintermann A, et al., Co-option of an ancestral cloacal regulatory landscape during digit evolution. Nature. 2025 Sep 17;

TSS for Gm14396:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18412	Chr2:74525605-74525623 (+)	5 bp
Tssr18413	Chr2:74525634-74525656 (+)	36 bp