Gm13886 Pseudogene Detail

Summary

• Symbol
  Gm13886
• Name
  predicted gene 13886

• Feature Type
  pseudogene
• IDs
  MGI:3649359
  NCBI Gene: 668744
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:104650428-104651317 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 54.97 cM

Strain
Comparison

• SNPs within 2kb
  118 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649359	pseudogene	Chr2:104650428-104651706 (+)
129S1/SvImJ	ENSMUSG00200008087	pseudogene	Chr2:101473125-101474307 (+)
A/J	ENSMUSG00195030714	pseudogene	Chr2:101630622-101631807 (+)
AKR/J	ENSMUSG00220001643	pseudogene	Chr2:101381664-101382848 (+)
BALB/cJ	ENSMUSG00180034672	pseudogene	Chr2:101431671-101432855 (+)
C3H/HeJ	ENSMUSG00175031719	pseudogene	Chr2:101723551-101724733 (+)
C57BL/6NJ	ENSMUSG00215029839	pseudogene	Chr2:101535402-101536584 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010567	pseudogene	Chr2:98294380-98295601 (+)
CAST/EiJ	ENSTCUG00005001754	pseudogene	Chr2:100803125-100804308 (+)
CBA/J	ENSMUSG00210038775	pseudogene	Chr2:101709424-101710609 (+)
DBA/2J	ENSMUSG00185005736	pseudogene	Chr2:101428417-101429601 (+)
FVB/NJ	ENSMUSG00205011395	pseudogene	Chr2:100755336-100756520 (+)
JF1/MsJ	ENSUMUG00000027850	pseudogene	Chr2:101132910-101134092 (+)
LP/J	ENSMUSG00230006599	pseudogene	Chr2:103177703-103178888 (+)
NOD/ShiLtJ	ENSMUSG00190015780	pseudogene	Chr2:101554435-101555617 (+)
NZO/HlLtJ	ENSMUSG00225008827	pseudogene	Chr2:111083921-111085103 (+)
PWK/PhJ	ENSLUMG00010025143	pseudogene	Chr2:101136442-101137623 (+)
SPRET/EiJ	ENSMSPG00010039367	pseudogene	Chr2:103180906-103182090 (+)
WSB/EiJ	ENSIUOG00005001548	pseudogene	Chr2:101234110-101235292 (+)

Homology

• Gene Tree
  Gm13886
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm13886
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000083856 (Evidence)
• NCBI Gene
  668744

Representative Sequences			Length	Strain/Species
genomic	668744	NCBI Gene Model | MGI Sequence Detail	890	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm13886:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19223	Chr2:104651144-104651168 (+)	728 bp