Gm13875 Pseudogene Detail

Summary

• Symbol
  Gm13875
• Name
  predicted gene 13875

• Feature Type
  pseudogene
• IDs
  MGI:3649350
  NCBI Gene: 102638254
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:103669299-103669580 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 54.43 cM

Strain
Comparison

• SNPs within 2kb
  142 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649350	pseudogene	Chr2:103669231-103669580 (+)
129S1/SvImJ	ENSMUSG00200002440	pseudogene	Chr2:100486517-100486798 (+)
A/J	ENSMUSG00195000677	pseudogene	Chr2:100662728-100663011 (+)
AKR/J	ENSMUSG00220001615	pseudogene	Chr2:100412817-100413100 (+)
BALB/cJ	ENSMUSG00180020765	pseudogene	Chr2:100463789-100464072 (+)
C3H/HeJ	ENSMUSG00175010085	pseudogene	Chr2:100735885-100736166 (+)
C57BL/6NJ	ENSMUSG00215020429	pseudogene	Chr2:100553329-100553610 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010562	pseudogene	Chr2:97153263-97153545 (+)
CAST/EiJ	ENSTCUG00005001633	pseudogene	Chr2:99824373-99824654 (+)
CBA/J	ENSMUSG00210002266	pseudogene	Chr2:100741576-100741859 (+)
DBA/2J	ENSMUSG00185005681	pseudogene	Chr2:100460627-100460910 (+)
FVB/NJ	ENSMUSG00205011243	pseudogene	Chr2:99777999-99778280 (+)
JF1/MsJ	ENSUMUG00000027696	pseudogene	Chr2:100150344-100150621 (+)
LP/J	ENSMUSG00230001003	pseudogene	Chr2:102209955-102210238 (+)
NOD/ShiLtJ	ENSMUSG00190024219	pseudogene	Chr2:100561452-100561733 (+)
NZO/HlLtJ	ENSMUSG00225008979	pseudogene	Chr2:110109213-110109494 (+)
PWK/PhJ	ENSLUMG00010025104	pseudogene	Chr2:100156694-100156977 (+)
SPRET/EiJ	ENSMSPG00010037045	pseudogene	Chr2:102184440-102184719 (+)
WSB/EiJ	ENSIUOG00005001495	pseudogene	Chr2:100254637-100254918 (+)

Homology

• Gene Tree
  Gm13875
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm13875
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000081275 (Evidence)
• NCBI Gene
  102638254

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081275	Ensembl Gene Model | MGI Sequence Detail	282	C57BL/6J
transcript	ENSMUST00000120162	Ensembl | MGI Sequence Detail	282	Not Applicable

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm13875:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19174	Chr2:103669265-103669273 (+)	-30 bp