Gm12968 Gene Detail

Summary

• Symbol
  Gm12968
• Name
  predicted gene 12968

• Feature Type
  lncRNA gene
• IDs
  MGI:3649345
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:128739990-128767491 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 62.34 cM

Strain
Comparison

• SNPs within 2kb
  420 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649345	lncRNA gene	Chr4:128739990-128767491 (+)
129S1/SvImJ	ENSMUSG00200021295	lncRNA gene	Chr4:122175893-122203615 (+)
A/J	ENSMUSG00195045093	lncRNA gene	Chr4:123515884-123543164 (+)
AKR/J	ENSMUSG00220048653	lncRNA gene	Chr4:122506407-122534010 (+)
BALB/cJ	ENSMUSG00180046937	lncRNA gene	Chr4:121149555-121176838 (+)
C3H/HeJ	ENSMUSG00175026215	lncRNA gene	Chr4:122162180-122189468 (+)
C57BL/6NJ	ENSMUSG00215052374	lncRNA gene	Chr4:123662779-123690294 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005924	lincRNA gene	Chr4:118651248-118678520 (+)
CAST/EiJ	ENSTCUG00005048715	lncRNA gene	Chr4:123044072-123071199 (+)
CBA/J	ENSMUSG00210052753	lncRNA gene	Chr4:121791055-121818327 (+)
DBA/2J	ENSMUSG00185052946	lncRNA gene	Chr4:123323619-123350902 (+)
FVB/NJ	ENSMUSG00205028796	lncRNA gene	Chr4:121549848-121577399 (+)
JF1/MsJ	ENSUMUG00000044816	lncRNA gene	Chr4:123967355-123995132 (+)
LP/J	ENSMUSG00230039105	lncRNA gene	Chr4:127113420-127141130 (+)
NOD/ShiLtJ	ENSMUSG00190050495	lncRNA gene	Chr4:121550084-121577374 (+)
NZO/HlLtJ	ENSMUSG00225026767	lncRNA gene	Chr4:133033949-133061549 (+)
PWK/PhJ	ENSLUMG00010047772	lncRNA gene	Chr4:121005909-121033467 (+)
SPRET/EiJ	ENSMSPG00010045230	lncRNA gene	Chr4:123084861-123112449 (+)
WSB/EiJ	ENSIUOG00005047223	lncRNA gene	Chr4:121404700-121434851 (+)

Homology

• Gene Tree
  Gm12968
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12968
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000085701 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085701	Ensembl Gene Model | MGI Sequence Detail	27502	C57BL/6J
transcript	ENSMUST00000138291	Ensembl | MGI Sequence Detail	1454	Not Applicable

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Gm12968:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39081	Chr4:128739956-128739959 (+)	-32 bp