Gm13814 Gene Detail

Summary

• Symbol
  Gm13814
• Name
  predicted gene 13814

• Feature Type
  lncRNA gene
• IDs
  MGI:3649319
  NCBI Gene: 105244234
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:92314164-92360407 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 51.08 cM

Strain
Comparison

• SNPs within 2kb
  1384 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649319	lncRNA gene	Chr2:92314164-92360407 (+)
129S1/SvImJ	ENSMUSG00200054037	lncRNA gene	Chr2:89230569-89276569 (+)
A/J	ENSMUSG00195053704	lncRNA gene	Chr2:89367262-89413085 (+)
AKR/J	ENSMUSG00220053024	lncRNA gene	Chr2:89162051-89207851 (+)
BALB/cJ	ENSMUSG00180054842	lncRNA gene	Chr2:89265263-89311264 (+)
C3H/HeJ	ENSMUSG00175054237	lncRNA gene	Chr2:89526698-89572491 (+)
C57BL/6NJ	ENSMUSG00215054043	lncRNA gene	Chr2:89357795-89403806 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005426	lincRNA gene	Chr2:86612554-86659392 (+)
CAST/EiJ	ENSTCUG00005052899	lncRNA gene	Chr2:88777510-88823498 (+)
CBA/J	ENSMUSG00210042707	lncRNA gene	Chr2:89537759-89583760 (+)
DBA/2J	ENSMUSG00185057262	lncRNA gene	Chr2:89261644-89307640 (+)
FVB/NJ	ENSMUSG00205052743	lncRNA gene	Chr2:88548594-88594398 (+)
JF1/MsJ	ENSUMUG00000036736	lncRNA gene	Chr2:89082208-89133138 (+)
LP/J	ENSMUSG00230045910	lncRNA gene	Chr2:91012157-91058153 (+)
NOD/ShiLtJ	ENSMUSG00190051364	lncRNA gene	Chr2:89340289-89386281 (+)
NZO/HlLtJ	ENSMUSG00225053795	lncRNA gene	Chr2:98927346-98973350 (+)
PWK/PhJ	ENSLUMG00010051799	lncRNA gene	Chr2:89060148-89106696 (+)
SPRET/EiJ	ENSMSPG00010052155	lncRNA gene	Chr2:91015973-91068723 (+)
WSB/EiJ	ENSIUOG00005053503	lncRNA gene	Chr2:89066317-89112352 (+)

Homology

• Gene Tree
  Gm13814
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  2
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving Gm13814
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000085261 (Evidence)
• NCBI Gene
  105244234

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085261	Ensembl Gene Model | MGI Sequence Detail	46244	C57BL/6J
transcript	ENSMUST00000141341	Ensembl | MGI Sequence Detail	3077	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 15

  Phenotypes 8
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Gm13814:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18949	Chr2:92314178-92314221 (+)	36 bp