Slc13a2os Gene Detail

Summary

• Symbol
  Slc13a2os
• Name
  solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2, opposite strand
• Synonyms
  Gm11194

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3649278
  NCBI Gene: 790911
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr11:78285311-78296483 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 46.74 cM

Strain
Comparison

• SNPs within 2kb
  346 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649278	antisense lncRNA gene	Chr11:78285311-78296483 (+)
129S1/SvImJ	ENSMUSG00200051996	lncRNA gene	Chr11:75402190-75413362 (+)
A/J	ENSMUSG00195045571	lncRNA gene	Chr11:75280998-75292172 (+)
AKR/J	ENSMUSG00220048814	lncRNA gene	Chr11:75504915-75516087 (+)
BALB/cJ	ENSMUSG00180045015	lncRNA gene	Chr11:75469779-75480951 (+)
C3H/HeJ	ENSMUSG00175039567	lncRNA gene	Chr11:75438994-75450166 (+)
C57BL/6NJ	ENSMUSG00215042969	lncRNA gene	Chr11:75063016-75074188 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002658	antisense lncRNA gene	Chr11:73335788-73347684 (+)
CAST/EiJ	ENSTCUG00005046021	lncRNA gene	Chr11:74960882-74971998 (+)
CBA/J	ENSMUSG00210046992	lncRNA gene	Chr11:75257427-75268596 (+)
DBA/2J	ENSMUSG00185041581	lncRNA gene	Chr11:75527456-75538628 (+)
FVB/NJ	ENSMUSG00205047300	lncRNA gene	Chr11:75357041-75368213 (+)
JF1/MsJ	ENSUMUG00000052679	lncRNA gene	Chr11:75906908-75918133 (+)
LP/J	ENSMUSG00230049722	lncRNA gene	Chr11:76557909-76569081 (+)
NOD/ShiLtJ	ENSMUSG00190047900	lncRNA gene	Chr11:75574505-75585679 (+)
NZO/HlLtJ	ENSMUSG00225039440	lncRNA gene	Chr11:78725399-78736571 (+)
PWK/PhJ	ENSLUMG00010025284	lncRNA gene	Chr11:75431981-75443187 (+)
SPRET/EiJ	ENSMSPG00010043272	lncRNA gene	Chr11:75842143-75853315 (+)
WSB/EiJ	ENSIUOG00005037666	lncRNA gene	Chr11:75417737-75428909 (+)

Homology

• Gene Tree
  Slc13a2os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  1
• Targeted
  2
• Genomic Mutations
  3 involving Slc13a2os
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000085747 (Evidence)
• NCBI Gene
  790911

Representative Sequences			Length	Strain/Species
genomic	790911	NCBI Gene Model | MGI Sequence Detail	11173	C57BL/6J
transcript	NR_003282	RefSeq | MGI Sequence Detail	3627	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 20

  Phenotypes 11
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:316399 LassegueI B, et al., Characterization of Poldip2 knockout mice: Avoiding incorrect gene targeting. PLoS One. 2021;16(12)

TSS for Slc13a2os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103294	Chr11:78285304-78285315 (+)	-1 bp
Tssr103295	Chr11:78285319-78285331 (+)	14 bp
Tssr3588	Chr11:78292209-78292210 (+)	6,899 bp
Tssr103296	Chr11:78295526-78295558 (+)	10,231 bp