Gm13972 Gene Detail

Summary

• Symbol
  Gm13972
• Name
  predicted gene 13972

• Feature Type
  lncRNA gene
• IDs
  MGI:3649226
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:114484906-114528320 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 57.80 cM

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649226	lncRNA gene	Chr2:114484906-114528320 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015457	unclassified non-coding RNA gene	Chr2:117140869-117185654 (+)
A/J	MGP_AJ_G0015433	unclassified non-coding RNA gene	Chr2:112401754-112444732 (+)
AKR/J	MGP_AKRJ_G0015397	unclassified non-coding RNA gene	Chr2:115525256-115573624 (+)
BALB/cJ	MGP_BALBcJ_G0015396	unclassified non-coding RNA gene	Chr2:112623712-112672806 (+)
C3H/HeJ	MGP_C3HHeJ_G0015219	unclassified non-coding RNA gene	Chr2:115929583-115974159 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015850	unclassified non-coding RNA gene	Chr2:121018362-121069599 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013589	unclassified non-coding RNA gene	Chr2:107540050-107581125 (+)
CAST/EiJ	MGP_CASTEiJ_G0014771	unclassified non-coding RNA gene	Chr2:116235759-116279684 (+)
CBA/J	MGP_CBAJ_G0015200	unclassified non-coding RNA gene	Chr2:125263290-125307060 (+)
DBA/2J	MGP_DBA2J_G0015294	unclassified non-coding RNA gene	Chr2:111825445-111869016 (+)
FVB/NJ	MGP_FVBNJ_G0015301	unclassified non-coding RNA gene	Chr2:110693728-110737706 (+)
LP/J	MGP_LPJ_G0015372	unclassified non-coding RNA gene	Chr2:117444723-117493344 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015325	unclassified non-coding RNA gene	Chr2:129616423-129669959 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015890	unclassified non-coding RNA gene	Chr2:115598590-115642209 (+)
PWK/PhJ	MGP_PWKPhJ_G0014559	unclassified non-coding RNA gene	Chr2:111362498-111407404 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014347	unclassified non-coding RNA gene	Chr2:114714285-114760376 (+)
WSB/EiJ	MGP_WSBEiJ_G0014878	unclassified non-coding RNA gene	Chr2:116417028-116461568 (+)

Homology

• Gene Tree
  Gm13972
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm13972
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000084785 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084785	Ensembl Gene Model | MGI Sequence Detail	43415	C57BL/6J
transcript	ENSMUST00000153726	Ensembl | MGI Sequence Detail	3164	Not Applicable

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17