Gm12871 Pseudogene Detail

Summary

• Symbol
  Gm12871
• Name
  predicted gene 12871

• Feature Type
  pseudogene
• IDs
  MGI:3649219
  NCBI Gene: 102631670
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:120758420-120758857 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 56.63 cM

Strain
Comparison

• SNPs within 2kb
  15 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649219	pseudogene	Chr4:120758319-120758965 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012855	pseudogene	Chr4:122195637-122196074 (+)
A/J	MGP_AJ_G0012840	pseudogene	Chr4:117377130-117377567 (+)
AKR/J	MGP_AKRJ_G0012810	pseudogene	Chr4:119967214-119967651 (+)
BALB/cJ	MGP_BALBcJ_G0012819	pseudogene	Chr4:117989266-117989703 (+)
C3H/HeJ	MGP_C3HHeJ_G0012678	pseudogene	Chr4:121493829-121494266 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013158	pseudogene	Chr4:126797059-126797496 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011411	pseudogene	Chr4:111424785-111425189 (+)
CAST/EiJ	MGP_CASTEiJ_G0012426	pseudogene	Chr4:118862128-118862541 (+)
CBA/J	MGP_CBAJ_G0012654	pseudogene	Chr4:130244349-130244786 (+)
DBA/2J	MGP_DBA2J_G0012715	pseudogene	Chr4:117955475-117955912 (+)
FVB/NJ	MGP_FVBNJ_G0012718	pseudogene	Chr4:116479070-116479507 (+)
LP/J	MGP_LPJ_G0012791	pseudogene	Chr4:122321203-122321640 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012729	pseudogene	Chr4:135056753-135057190 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013170	pseudogene	Chr4:121030095-121030532 (+)
PWK/PhJ	MGP_PWKPhJ_G0012246	pseudogene	Chr4:114895710-114896817 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012057	pseudogene	Chr4:117450418-117450814 (+)
WSB/EiJ	MGP_WSBEiJ_G0012454	pseudogene	Chr4:121052813-121053250 (+)

Homology

• Gene Tree
  Gm12871
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12871
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000082200 (Evidence)
• NCBI Gene
  102631670

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082200	Ensembl Gene Model | MGI Sequence Detail	438	C57BL/6J
transcript	ENSMUST00000118758	Ensembl | MGI Sequence Detail	438	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;