Gm6807 Pseudogene Detail

Summary

• Symbol
  Gm6807
• Name
  predicted gene 6807

• Feature Type
  pseudogene
• IDs
  MGI:3649145
  NCBI Gene: 627889
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:45438747-45439634 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 38.75 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  92 from dbSNP Build 142
• Strain Annotations
  21

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649145	pseudogene	Chr19:45438715-45439686 (-)
129S1/SvImJ	ENSMUSG00200021767	pseudogene	Chr19:42142600-42143487 (-)
A/J	ENSMUSG00195018446	pseudogene	Chr19:42277742-42278629 (-)
AKR/J	ENSMUSG00220019697	pseudogene	Chr19:42077364-42078251 (-)
BALB/cJ	ENSMUSG00180021605	pseudogene	Chr19:42530060-42530947 (-)
C3H/HeJ	ENSMUSG00175006423	pseudogene	Chr19:42072267-42073154 (-)
C57BL/6NJ	ENSMUSG00215005031	pseudogene	Chr19:42135564-42136451 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012537	pseudogene	ChrX:8649381-8650852 (-)
CAST/EiJ	ENSTCUG00005016906	pseudogene	Chr19:41716918-41717807 (-)
CBA/J	ENSMUSG00210019152	pseudogene	Chr19:42151888-42152775 (-)
DBA/2J	ENSMUSG00185009095	pseudogene	Chr19:42653620-42654507 (-)
FVB/NJ	ENSMUSG00205038801	pseudogene	Chr19:41566293-41567180 (-)
JF1/MsJ	ENSUMUG00000044961	pseudogene	Chr19:42796491-42797381 (-)
LP/J	ENSMUSG00230025583	pseudogene	Chr19:43412387-43413274 (-)
NOD/ShiLtJ	ENSMUSG00190005835	pseudogene	Chr19:42014903-42015790 (-)
NZO/HlLtJ	ENSMUSG00225044451	pseudogene	Chr19:47006596-47007483 (-)
PWK/PhJ	ENSLUMG00010001200	pseudogene	Chr19:41963568-41964458 (-)
SPRET/EiJ	ENSMSPG00010034489	pseudogene	Chr13:47284619-47285509 (-)
SPRET/EiJ	ENSMSPG00010007840	pseudogene	Chr19:41706357-41707249 (-)
SPRET/EiJ	ENSMSPG00010030404	pseudogene	Chr1:10730806-10731696 (-)
WSB/EiJ	ENSIUOG00005006968	pseudogene	Chr19:41514965-41515852 (-)

Homology

• Gene Tree
  Gm6807
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  3
• Targeted
  3
• Genomic Mutations
  3 involving Gm6807
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000057605 (Evidence)
• NCBI Gene
  627889

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000057605	Ensembl Gene Model | MGI Sequence Detail	888	C57BL/6J
transcript	ENSMUST00000077435	Ensembl | MGI Sequence Detail	888	Not Applicable

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:196292 Marinic M, et al., An integrated holo-enhancer unit defines tissue and gene specificity of the Fgf8 regulatory landscape. Dev Cell. 2013 Mar 11;24(5):530-42

TSS for Gm6807:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr159553	Chr19:45439650-45439676 (-)	-29 bp