Gm5523 Pseudogene Detail

Summary

• Symbol
  Gm5523
• Name
  predicted pseudogene 5523

• Feature Type
  pseudogene
• IDs
  MGI:3649089
  NCBI Gene: 433273
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:13856107-13857103 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 4.31 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  212 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649089	pseudogene	Chr1:13855909-13857153 (-)
129S1/SvImJ	ENSMUSG00200018643	pseudogene	Chr1:11204442-11205448 (-)
A/J	ENSMUSG00195027612	pseudogene	Chr1:11004566-11005572 (-)
AKR/J	ENSMUSG00220008395	pseudogene	Chr1:11075078-11076084 (-)
BALB/cJ	ENSMUSG00180027046	pseudogene	Chr1:11070933-11071939 (-)
C3H/HeJ	ENSMUSG00175000498	pseudogene	Chr1:10999610-11000616 (-)
C57BL/6NJ	ENSMUSG00215014507	pseudogene	Chr1:11057339-11058335 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023134	pseudogene	Chr1:11431840-11432837 (-)
CBA/J	ENSMUSG00210002963	pseudogene	Chr1:10870089-10871095 (-)
DBA/2J	ENSMUSG00185004197	pseudogene	Chr1:11937978-11938984 (-)
FVB/NJ	ENSMUSG00205018208	pseudogene	Chr1:11153663-11154669 (-)
JF1/MsJ	ENSUMUG00000024487	pseudogene	Chr1:11225938-11226934 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190034029	pseudogene	Chr1:10978013-10979019 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010023251	pseudogene	Chr1:10841258-10842254 (-)
SPRET/EiJ	ENSMSPG00010027439	pseudogene	Chr1:11534399-11535396 (-)
WSB/EiJ	ENSIUOG00005012008	pseudogene	Chr1:10997074-10998080 (-)

Homology

• Gene Tree
  Gm5523
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000097711 (Evidence)
• NCBI Gene
  433273

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097711	Ensembl Gene Model | MGI Sequence Detail	997	C57BL/6J
transcript	ENSMUST00000180415	Ensembl | MGI Sequence Detail	997	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 5

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;