Gm5432 MGI Mouse Gene Detail - MGI:3649057

Sequence Map

Chr12:15866976-15938841 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649057	lncRNA gene	Chr12:15865069-15938841 (+)
129S1/SvImJ	ENSMUSG00200023560	lncRNA gene	Chr12:12897459-12969242 (+)
A/J	ENSMUSG00195021125	lncRNA gene	Chr12:12919371-12998448 (+)
AKR/J	ENSMUSG00220030493	lncRNA gene	Chr12:13006767-13078650 (+)
BALB/cJ	ENSMUSG00180010024	lncRNA gene	Chr12:12905232-12977037 (+)
C3H/HeJ	ENSMUSG00175006070	lncRNA gene	Chr12:12939262-13010835 (+)
C57BL/6NJ	ENSMUSG00215007670	lncRNA gene	Chr12:12713252-12772333 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004853	lincRNA gene	Chr12:12242100-12305240 (+)
CAST/EiJ	ENSTCUG00005005994	lncRNA gene	Chr12:12438555-12503235 (+)
CBA/J	ENSMUSG00210008360	lncRNA gene	Chr12:12951071-13022652 (+)
DBA/2J	ENSMUSG00185004008	lncRNA gene	Chr12:12861736-12932523 (+)
FVB/NJ	ENSMUSG00205002084	lncRNA gene	Chr12:12685306-12849824 (+)
JF1/MsJ	ENSUMUG00000008805	lncRNA gene	Chr12:12755791-12827905 (+)
LP/J	ENSMUSG00230022762	lncRNA gene	Chr12:14674540-14746204 (+)
NOD/ShiLtJ	ENSMUSG00190013577	lncRNA gene	Chr12:14146193-14217750 (+)
NZO/HlLtJ	ENSMUSG00225030102	lncRNA gene	Chr12:16771833-16843615 (+)
PWK/PhJ	ENSLUMG00010004946	lncRNA gene	Chr12:12549806-12613801 (+)
SPRET/EiJ	ENSMSPG00010003083	lncRNA gene	Chr12:13515761-13580259 (+)
WSB/EiJ	ENSIUOG00005001951	lncRNA gene	Chr12:12917450-12981966 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	432636	NCBI Gene Model \| MGI Sequence Detail	71866	C57BL/6J	± kb
	transcript	AK045700	GenBank \| ENA \| DDBJ \| MGI Sequence Detail	1670	C57BL/6J

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Summaries

All 10
Earliest

J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Gm5432:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr112840	Chr12:15865018-15865028 (+)	-1,953 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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