Gm5700 Pseudogene Detail

Summary

• Symbol
  Gm5700
• Name
  predicted gene 5700

• Feature Type
  pseudogene
• IDs
  MGI:3649023
  NCBI Gene: 435619
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:44369211-44370198 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 23.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  189 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649023	pseudogene	Chr1:44369208-44370198 (-)
129S1/SvImJ	ENSMUSG00200002276	pseudogene	Chr1:41999751-42000739 (-)
A/J	ENSMUSG00195002154	pseudogene	Chr1:41729726-41730714 (-)
AKR/J	ENSMUSG00220004190	pseudogene	Chr1:41709212-41710200 (-)
BALB/cJ	ENSMUSG00180003430	pseudogene	Chr1:41714844-41715832 (-)
C3H/HeJ	ENSMUSG00175000257	pseudogene	Chr1:41746800-41747788 (-)
C57BL/6NJ	ENSMUSG00215003133	pseudogene	Chr1:41686136-41687124 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009080	pseudogene	Chr1:38845460-38846418 (-)
CAST/EiJ	ENSTCUG00005001120	pseudogene	Chr1:41781924-41783281 (-)
CBA/J	ENSMUSG00210030065	pseudogene	Chr1:41485444-41486432 (-)
DBA/2J	ENSMUSG00185031629	pseudogene	Chr1:42595210-42596198 (-)
FVB/NJ	ENSMUSG00205004079	pseudogene	Chr1:41658372-41659360 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230001592	pseudogene	Chr1:42600391-42601379 (-)
NOD/ShiLtJ	ENSMUSG00190002778	pseudogene	Chr1:41682748-41683736 (-)
NZO/HlLtJ	ENSMUSG00225001178	pseudogene	Chr1:45835487-45836475 (-)
PWK/PhJ	ENSLUMG00010002882	pseudogene	Chr1:41277127-41278115 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005003863	pseudogene	Chr1:41625685-41626832 (-)

Homology

• Gene Tree
  Gm5700
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm5700
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000100966 (Evidence)
• NCBI Gene
  435619

Representative Sequences			Length	Strain/Species
genomic	435619	NCBI Gene Model | MGI Sequence Detail	988	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22