Rpl21-ps13 Pseudogene Detail

Summary

• Symbol
  Rpl21-ps13
• Name
  ribosomal protein L21-ps13
• Synonyms
  Gm5603

• Feature Type
  pseudogene
• IDs
  MGI:3649022
  NCBI Gene: 434253
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:139299315-139299797 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 84.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  41 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649022	pseudogene	Chr7:139299273-139299866 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014029	pseudogene	Chr7:144780929-144782818 (+)
A/J	MGP_AJ_G0014045	pseudogene	Chr7:140670457-140671745 (+)
AKR/J	MGP_AKRJ_G0013979	pseudogene	Chr7:144487703-144490542 (+)
BALB/cJ	MGP_BALBcJ_G0014003	pseudogene	Chr7:140413479-140414011 (+)
C3H/HeJ	MGP_C3HHeJ_G0013837	pseudogene	Chr7:144294401-144295898 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0013977	pseudogene	Chr7:146316256-146317618 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013923	pseudogene	Chr7:155852698-155853844 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014405	pseudogene	Chr7:143481337-143482583 (+)
PWK/PhJ	MGP_PWKPhJ_G0013309	pseudogene	Chr7:131797574-131798056 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rpl21-ps13
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Rpl21-ps13
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  1

• Ensembl
  ENSMUSG00000056777 (Evidence)
• NCBI Gene
  434253

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000056777	Ensembl Gene Model | MGI Sequence Detail	483	C57BL/6J
transcript	ENSMUST00000072532	Ensembl | MGI Sequence Detail	483	Not Applicable

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
• Latest
  J:187438 Peters J, et al., Identification and characterisation of imprinted genes in the mouse. Brief Funct Genomic Proteomic. 2004 Feb;2(4):320-33

TSS for Rpl21-ps13:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr69731	Chr7:139299272-139299275 (+)	-41 bp