Rpl21-ps13 Pseudogene Detail

Summary

• Symbol
  Rpl21-ps13
• Name
  ribosomal protein L21-ps13
• Synonyms
  Gm5603

• Feature Type
  pseudogene
• IDs
  MGI:3649022
  NCBI Gene: 434253
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:139299315-139299797 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 84.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  173 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649022	pseudogene	Chr7:139299273-139299866 (+)
129S1/SvImJ	ENSMUSG00200047421	pseudogene	Chr7:125864209-125864691 (+)
A/J	ENSMUSG00195040457	pseudogene	Chr7:130340988-130341470 (+)
AKR/J	ENSMUSG00220038112	pseudogene	Chr7:123823087-123823569 (+)
BALB/cJ	ENSMUSG00180041116	pseudogene	Chr7:127038790-127039272 (+)
C3H/HeJ	ENSMUSG00175042075	pseudogene	Chr7:127767092-127767574 (+)
C57BL/6NJ	ENSMUSG00215047170	pseudogene	Chr7:127033287-127033769 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210031134	pseudogene	Chr7:127499100-127499582 (+)
DBA/2J	ENSMUSG00185018807	pseudogene	Chr7:131803432-131803914 (+)
FVB/NJ	ENSMUSG00205045336	pseudogene	Chr7:127490301-127490783 (+)
JF1/MsJ	ENSUMUG00000047460	pseudogene	Chr7:136885613-136886095 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190032201	pseudogene	Chr7:127632581-127633063 (+)
NZO/HlLtJ	ENSMUSG00225052426	pseudogene	Chr7:136176166-136176648 (+)
PWK/PhJ	ENSLUMG00010049207	pseudogene	Chr7:126032764-126033246 (+)
SPRET/EiJ	ENSMSPG00010044533	pseudogene	Chr7:127392344-127392827 (+)
WSB/EiJ	ENSIUOG00005038189	pseudogene	Chr7:128319949-128320431 (+)

Homology

• Gene Tree
  Rpl21-ps13
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Rpl21-ps13
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000056777 (Evidence)
• NCBI Gene
  434253

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000056777	Ensembl Gene Model | MGI Sequence Detail	483	C57BL/6J
transcript	ENSMUST00000072532	Ensembl | MGI Sequence Detail	483	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
• Latest
  J:187438 Peters J, et al., Identification and characterisation of imprinted genes in the mouse. Brief Funct Genomic Proteomic. 2004 Feb;2(4):320-33

TSS for Rpl21-ps13:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr69731	Chr7:139299272-139299275 (+)	-41 bp