Gm4950 Pseudogene Detail

Summary

• Symbol
  Gm4950
• Name
  predicted pseudogene 4950

• Feature Type
  pseudogene
• IDs
  MGI:3649015
  NCBI Gene: 240289
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:51998339-51998953 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 28.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649015	pseudogene	Chr18:51998253-51998990 (-)
129S1/SvImJ	ENSMUSG00200031133	pseudogene	Chr18:49054901-49055515 (-)
A/J	ENSMUSG00195025691	pseudogene	Chr18:49195936-49196550 (-)
AKR/J	ENSMUSG00220021796	pseudogene	Chr18:49147087-49147701 (-)
BALB/cJ	ENSMUSG00180007847	pseudogene	Chr18:49756560-49757174 (-)
C3H/HeJ	ENSMUSG00175011355	pseudogene	Chr18:49365423-49366037 (-)
C57BL/6NJ	ENSMUSG00215009893	pseudogene	Chr18:48719607-48720221 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0022006	protein coding gene	Chr18:8957968-8958588 (+)
CAST/EiJ	ENSTCUG00005014479	pseudogene	Chr18:48596318-48596932 (-)
CBA/J	ENSMUSG00210022630	pseudogene	Chr18:49298959-49299573 (-)
DBA/2J	ENSMUSG00185028530	pseudogene	Chr18:49218889-49219503 (-)
FVB/NJ	ENSMUSG00205015996	pseudogene	Chr18:48665558-48666172 (-)
JF1/MsJ	ENSUMUG00000030343	pseudogene	Chr18:49112792-49113406 (-)
LP/J	ENSMUSG00230012434	pseudogene	Chr18:51214828-51215442 (-)
NOD/ShiLtJ	ENSMUSG00190028710	pseudogene	Chr18:48916648-48917262 (-)
NZO/HlLtJ	ENSMUSG00225035751	pseudogene	Chr18:51118933-51119547 (-)
PWK/PhJ	ENSLUMG00010022307	pseudogene	Chr18:49296227-49296841 (-)
SPRET/EiJ	ENSMSPG00010013490	pseudogene	Chr18:49602724-49603338 (-)
WSB/EiJ	ENSIUOG00005009716	pseudogene	Chr18:48806934-48807548 (-)

Homology

• Gene Tree
  Gm4950
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm4950
• Incidental Mutations
  Mutagenetix
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000069379 (Evidence)
• NCBI Gene
  240289

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000069379	Ensembl Gene Model | MGI Sequence Detail	615	C57BL/6J
transcript	ENSMUST00000091905	Ensembl | MGI Sequence Detail	615	Not Applicable

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67